Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   ABEG07_RS00190 Genome accession   NZ_CP155636
Coordinates   41310..42659 (-) Length   449 a.a.
NCBI ID   WP_070817193.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain SQ078     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36310..47659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG07_RS00165 (ABEG07_00165) - 37538..37768 (-) 231 WP_225307317.1 hypothetical protein -
  ABEG07_RS00170 (ABEG07_00170) - 37915..38424 (-) 510 WP_070817197.1 DUF1643 domain-containing protein -
  ABEG07_RS00175 (ABEG07_00175) - 38440..38751 (-) 312 WP_070817196.1 DUF960 family protein -
  ABEG07_RS00180 (ABEG07_00180) - 38847..39185 (-) 339 WP_070817195.1 SAUGI family uracil-DNA glycosylase inhibitor -
  ABEG07_RS00185 (ABEG07_00185) ccrB 39660..41288 (-) 1629 WP_346842663.1 recombinase family protein Machinery gene
  ABEG07_RS00190 (ABEG07_00190) ccrA 41310..42659 (-) 1350 WP_070817193.1 recombinase family protein Machinery gene
  ABEG07_RS00195 (ABEG07_00195) - 42837..43094 (-) 258 WP_070817192.1 hypothetical protein -
  ABEG07_RS00200 (ABEG07_00200) - 43162..44952 (-) 1791 WP_070817191.1 DUF927 domain-containing protein -
  ABEG07_RS00205 (ABEG07_00205) - 44952..45242 (-) 291 WP_070817190.1 hypothetical protein -
  ABEG07_RS00210 (ABEG07_00210) - 45384..46457 (+) 1074 WP_070817189.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52295.94 Da        Isoelectric Point: 9.9049

>NTDB_id=998194 ABEG07_RS00190 WP_070817193.1 41310..42659(-) (ccrA) [Staphylococcus lugdunensis strain SQ078]
MKQAIGYLRQSTTMQQSLAAQKQTIKALAEKHNIPHITFYNDKQSGRTDKRNGYQQITELIQQEQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKARQGKLITTHAPFGYTYR
NGTFTINQDEAPTVKAIFHYYLQGYGYKKIAQYLEKDDKCINRKPYQVRAIITNPNYCGRVINQYGQYDNMFPSIVSTNI
YEQAQEIRSQKHTKRTPSDNQLQKKIKCPYCNSTLTNMTIRKKHHTLRYYVCPQNMNASRFVCAFKGINAQVLETSVLET
CQDFFQNQQLYSKINHTIQQRLKRQRDIEAKHILTQEQLIDKLAKGMIDAETFRNQSQSVLQNRKTISSISDTQLQTSLQ
KVIQKSFTLNMLYPYIDVIHITKNKELSGIYIKNEPLNIVNQTIQSSTG

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=998194 ABEG07_RS00190 WP_070817193.1 41310..42659(-) (ccrA) [Staphylococcus lugdunensis strain SQ078]
ATGAAACAAGCAATTGGTTACTTACGACAGAGCACTACAATGCAACAATCCTTAGCAGCACAAAAACAAACCATCAAGGC
ATTAGCCGAAAAACATAATATTCCACATATTACTTTTTATAACGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTGATTCAACAGGAACAATGTGACGTACTATGTTGCTATCGTCTGAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCCTTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTTAAAAATGGTCTTAAAGAAAAAGCTAGACAAGGCAAACTCATCACGACACATGCACCATTTGGTTATACCTATCGC
AATGGTACATTCACAATTAATCAAGATGAAGCTCCAACGGTAAAGGCAATATTCCATTACTACCTACAAGGCTATGGTTA
TAAGAAAATTGCGCAATACCTAGAAAAAGATGATAAATGTATTAATCGTAAACCCTACCAAGTACGCGCTATTATCACGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGACAACATGTTCCCATCTATTGTTTCGACCAATATA
TACGAACAAGCTCAAGAAATACGGTCACAAAAACATACAAAACGGACTCCATCAGATAATCAACTTCAGAAGAAAATCAA
ATGTCCATATTGTAATTCAACACTGACTAATATGACGATTAGAAAAAAGCACCATACGTTACGTTATTATGTCTGTCCTC
AAAATATGAATGCATCACGTTTTGTCTGTGCATTCAAAGGAATCAATGCGCAAGTATTAGAAACAAGTGTCTTAGAGACT
TGTCAGGACTTCTTTCAGAACCAACAGCTCTATTCAAAAATCAACCATACAATTCAACAACGACTCAAAAGACAAAGGGA
CATAGAAGCTAAACATATACTCACGCAAGAACAACTGATAGATAAACTTGCCAAAGGTATGATTGATGCTGAAACATTTA
GGAATCAGTCTCAATCAGTGCTTCAAAATCGCAAAACCATATCCTCAATAAGTGATACTCAGTTACAAACATCACTACAA
AAGGTTATACAGAAAAGTTTCACGTTAAACATGTTGTATCCCTATATTGATGTCATTCATATTACTAAAAATAAAGAACT
AAGCGGAATCTATATAAAAAATGAGCCACTAAACATCGTTAATCAAACGATACAATCATCAACTGGCTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(169-250)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

82.998

99.555

0.826
  ccrA Staphylococcus aureus N315

74.61

100

0.746

Multiple sequence alignment