Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   ABEG07_RS00185 Genome accession   NZ_CP155636
Coordinates   39660..41288 (-) Length   542 a.a.
NCBI ID   WP_346842663.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain SQ078     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 34660..46288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG07_RS00155 (ABEG07_00155) - 34899..35897 (-) 999 WP_070817199.1 DNA cytosine methyltransferase -
  ABEG07_RS00160 (ABEG07_00160) - 36028..37239 (+) 1212 WP_070817198.1 hypothetical protein -
  ABEG07_RS00165 (ABEG07_00165) - 37538..37768 (-) 231 WP_225307317.1 hypothetical protein -
  ABEG07_RS00170 (ABEG07_00170) - 37915..38424 (-) 510 WP_070817197.1 DUF1643 domain-containing protein -
  ABEG07_RS00175 (ABEG07_00175) - 38440..38751 (-) 312 WP_070817196.1 DUF960 family protein -
  ABEG07_RS00180 (ABEG07_00180) - 38847..39185 (-) 339 WP_070817195.1 SAUGI family uracil-DNA glycosylase inhibitor -
  ABEG07_RS00185 (ABEG07_00185) ccrB 39660..41288 (-) 1629 WP_346842663.1 recombinase family protein Machinery gene
  ABEG07_RS00190 (ABEG07_00190) ccrA 41310..42659 (-) 1350 WP_070817193.1 recombinase family protein Machinery gene
  ABEG07_RS00195 (ABEG07_00195) - 42837..43094 (-) 258 WP_070817192.1 hypothetical protein -
  ABEG07_RS00200 (ABEG07_00200) - 43162..44952 (-) 1791 WP_070817191.1 DUF927 domain-containing protein -
  ABEG07_RS00205 (ABEG07_00205) - 44952..45242 (-) 291 WP_070817190.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62718.63 Da        Isoelectric Point: 9.5895

>NTDB_id=998193 ABEG07_RS00185 WP_346842663.1 39660..41288(-) (ccrB) [Staphylococcus lugdunensis strain SQ078]
MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIKEYCQFHHFEVTDIYADRGISGKSMNRPELQRMLKDANEGLIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
IPLGYEKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKDNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQDSQIDMAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQINQLKQQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVINRIDIRKDENHKKQFFVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=998193 ABEG07_RS00185 WP_346842663.1 39660..41288(-) (ccrB) [Staphylococcus lugdunensis strain SQ078]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CGATGGACAAATCAATCAGATTAAAGAATACTGTCAATTTCATCATTTTGAAGTCACAGATATTTACGCTGATCGTGGTA
TCTCAGGAAAATCTATGAACCGCCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCTCATCGATTGTGTCATG
GTATATAAAACAAACCGGCTCGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTACATAAACAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTCAACACTTCTTCGGGTAAACTGATGTTACAAATACTTGCGAGCTTCTCTG
AATTCGAACGCAATAACATTGTCGAAAATGTATTCATGGGACAAACCAGACGTGCACAAGAAGGCTATTATCAAGGCAAT
ATTCCACTTGGCTATGAGAAAATTCCAGACAATAAACATGAACTCATGATAAACCAACATGAAGCCAATATTGTGAAGTA
TATCTTTGAATCATACGCTAAAGGGCATGGCTATCGTAAAATTGCCAATGCCCTCAATCACAAAGGATATGTTACTAAAA
AAGATAATCCTTTTAGCATCAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAAGGACTGAATGATAAACCTATTATAGCTGATGGTAAACACCCTCCTATTAT
TAGTCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGCCCACAATGCGGCGCACCTATGGCGGCAAGTAATACCACTAATACACTCAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGCAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGATGTGATTGAGAAATACGTTATGGATCAAATACTCGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATTGATATGGCTGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGATATCACAAACCAAATTAATCAACTCAAGCAGCAACAAAACCAAGAAAAACCAT
CTTACGATACGAAACAAATCGCTGCTTTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTAACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTTTGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACACTCTACTTTCAAATTTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.347

100

0.863

Multiple sequence alignment