Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ABDZ24_RS21275 Genome accession   NZ_CP155623
Coordinates   4045437..4046150 (+) Length   237 a.a.
NCBI ID   WP_346817470.1    Uniprot ID   -
Organism   Bacillus paramobilis strain N24509     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4040437..4051150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS21250 (ABDZ24_21325) - 4041168..4041887 (-) 720 WP_000818987.1 3-ketoacyl-ACP reductase -
  ABDZ24_RS21255 (ABDZ24_21330) - 4042302..4043219 (+) 918 WP_000116408.1 ABC transporter ATP-binding protein -
  ABDZ24_RS21260 (ABDZ24_21335) - 4043216..4043968 (+) 753 WP_000590583.1 ABC transporter permease -
  ABDZ24_RS21265 (ABDZ24_21340) - 4043981..4044712 (+) 732 WP_098258277.1 ABC transporter permease -
  ABDZ24_RS21270 (ABDZ24_21345) - 4044735..4045085 (+) 351 WP_001169522.1 YxeA family protein -
  ABDZ24_RS21275 (ABDZ24_21350) scnR 4045437..4046150 (+) 714 WP_346817470.1 response regulator transcription factor Regulator
  ABDZ24_RS21280 (ABDZ24_21355) - 4046151..4047563 (+) 1413 WP_000398542.1 HAMP domain-containing sensor histidine kinase -
  ABDZ24_RS21285 (ABDZ24_21360) hitS 4047669..4048739 (-) 1071 WP_346817471.1 envelope stress sensor histidine kinase HitS -
  ABDZ24_RS21290 (ABDZ24_21365) hitR 4048736..4049413 (-) 678 WP_217993853.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26981.44 Da        Isoelectric Point: 5.4430

>NTDB_id=998140 ABDZ24_RS21275 WP_346817470.1 4045437..4046150(+) (scnR) [Bacillus paramobilis strain N24509]
MENLKDKKILIVDDEHEIRIMIEKLLRKEGFFRIYVTGDCTSALSFCQTNTPDIAILDIMLPDGDGFSLLSSIRQFSTIP
VLFLSARGEDEDRLLGLGLGADDYLVKPFLPRELVLRLIAILKRVYSSSIADRLSTFKLGEQIVDLESAVVYRGQKEIPL
TAKEHAILVKLYENQGRIITNDALCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIYLLTFRGLGYKLLVKETY

Nucleotide


Download         Length: 714 bp        

>NTDB_id=998140 ABDZ24_RS21275 WP_346817470.1 4045437..4046150(+) (scnR) [Bacillus paramobilis strain N24509]
ATGGAAAATTTAAAAGACAAAAAAATATTAATTGTAGACGATGAACACGAAATCAGAATAATGATTGAAAAACTTTTAAG
AAAAGAGGGATTTTTTCGTATTTATGTTACTGGTGACTGTACCTCTGCTCTATCATTTTGTCAGACAAACACTCCAGATA
TCGCGATTCTAGATATTATGTTACCTGATGGTGACGGATTTTCATTACTGTCTTCCATTAGGCAATTTTCGACTATACCA
GTTCTTTTTCTTTCCGCGCGGGGAGAGGATGAAGATCGATTGCTTGGATTGGGCTTGGGGGCAGATGATTACTTGGTAAA
ACCGTTTTTGCCACGTGAGTTGGTATTGCGGCTAATAGCGATTTTGAAACGTGTATACTCCTCCTCAATCGCAGATCGTC
TATCTACTTTTAAGTTAGGAGAACAAATTGTCGATCTCGAAAGCGCTGTTGTGTACAGAGGACAGAAAGAAATTCCCTTG
ACAGCAAAGGAGCATGCCATTCTTGTAAAACTCTATGAAAATCAAGGGCGAATCATTACAAATGACGCCTTATGTCAAGC
AGTTTGGGGAGATGACAGCTACGGTCTTGAAAATACATTAATGGTTCACATCAGGCGGATACGTGAAAAGATTGAGCTGG
ACCCTTCCAAACCAATCTATCTACTTACCTTCAGGGGACTAGGATATAAATTACTAGTAAAGGAGACATATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.082

97.468

0.498
  micA Streptococcus pneumoniae Cp1015

41.667

96.203

0.401
  vicR Streptococcus mutans UA159

39.738

96.624

0.384

Multiple sequence alignment