Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABDZ23_RS10345 Genome accession   NZ_CP155621
Coordinates   2303091..2304437 (+) Length   448 a.a.
NCBI ID   WP_247269222.1    Uniprot ID   -
Organism   Pseudomonas koreensis strain BM06     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2298091..2309437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ23_RS10320 (ABDZ23_10320) pgeF 2298300..2299022 (-) 723 WP_247269221.1 peptidoglycan editing factor PgeF -
  ABDZ23_RS10325 (ABDZ23_10325) rluD 2299019..2299981 (-) 963 WP_007963852.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABDZ23_RS10330 (ABDZ23_10330) - 2300132..2301154 (+) 1023 WP_027612809.1 outer membrane protein assembly factor BamD -
  ABDZ23_RS10335 (ABDZ23_10335) - 2301282..2301515 (+) 234 WP_183786036.1 PP0621 family protein -
  ABDZ23_RS10340 (ABDZ23_10340) pilS 2301505..2303094 (+) 1590 WP_247269258.1 ATP-binding protein Regulator
  ABDZ23_RS10345 (ABDZ23_10345) pilR 2303091..2304437 (+) 1347 WP_247269222.1 sigma-54 dependent transcriptional regulator Regulator
  ABDZ23_RS10350 (ABDZ23_10350) thiO 2304553..2305653 (-) 1101 WP_247269223.1 glycine oxidase ThiO -
  ABDZ23_RS10355 (ABDZ23_10355) - 2305711..2306112 (-) 402 WP_247269224.1 type IV pilin protein -
  ABDZ23_RS10360 (ABDZ23_10360) - 2306128..2309211 (-) 3084 WP_247269225.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49963.26 Da        Isoelectric Point: 6.5945

>NTDB_id=998088 ABDZ23_RS10345 WP_247269222.1 2303091..2304437(+) (pilR) [Pseudomonas koreensis strain BM06]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLQRNAFDLCLTDMRLPDGTGLDLVQHIQQRHPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSTALRMPAAGGSVTSIDRRLLGDSPPMRALRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAQQPFIPVNCGAIPSELMESEFFGHRKGSFTGAVDDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVAAGRFRQDLYYRLNVIELRVPSLRERRDDIEVLA
THMLQRLASNSGQPAAQLHPQALEALKRYRFPGNVRELENVLERAHTLCENQVIEAADLRLSEGNCAVEDGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=998088 ABDZ23_RS10345 WP_247269222.1 2303091..2304437(+) (pilR) [Pseudomonas koreensis strain BM06]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACTTTCAGCGCTCGCAACCTCGGCGAAGCCCAGGCACTGTTGCAGCGCAATGCGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACGGGGCTGGACCTGGTGCAGCACATCCAGCAACGTCATCCACAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACAGCGATCAATGCGCTGAAGGCCGGCGCCTTCGACTTCCTCACCAA
ACCGGTTGATCTCACGCGCCTGCGTGAACTGGTCAGCACCGCGTTGCGCATGCCTGCCGCCGGCGGCAGCGTCACCTCGA
TCGACCGCCGACTGTTGGGCGACTCGCCCCCAATGCGCGCTCTGCGCAAACAAATCGACAAGCTCGCCCGCAGTCAGGCT
CCGGTCTACATCAGCGGCGAATCGGGCAGCGGCAAAGAGCTGGTCGCGCGGCTGATCCACGAACAAGGGCCGCGCGCGCA
ACAGCCGTTTATACCGGTCAACTGCGGGGCGATCCCTTCAGAGCTGATGGAGAGCGAGTTTTTTGGCCATCGCAAAGGCA
GCTTCACCGGCGCGGTGGACGACAAACCGGGGCTGTTTCAGGCCGCGCACGGCGGCACCCTGTTTCTCGATGAAGTGGCG
GATCTGCCGCTGTCGATGCAGGTCAAGCTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAAGA
AACCGTGGTCGATGTGCGCATTCTGTGCGCCACACACAAAGACCTGGAAGCGGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ACCTGTATTACCGCTTGAATGTGATCGAACTGCGCGTGCCATCCCTGCGCGAACGGCGCGACGACATCGAAGTGCTGGCC
ACGCACATGCTCCAGCGTCTGGCCAGCAACAGTGGCCAGCCGGCAGCCCAATTGCACCCGCAAGCGCTCGAAGCACTGAA
GCGTTATCGTTTTCCCGGAAATGTGCGAGAACTGGAGAATGTCCTCGAACGCGCGCACACGCTGTGCGAAAACCAGGTGA
TCGAGGCTGCGGACTTGCGCTTGAGCGAAGGCAATTGCGCAGTAGAGGACGGCATTGCCGACCTGACGCAGATCGACAAC
CTTGAAGATTATCTGGAGAACGTCGAGCGCAAACTGATCCTGCAGGCGCTGGAGGAAACGCGCTGGAATCGCACGGCGGC
AGCGCAACGCTTGAGCCTGTCGTTTCGGTCGATGCGTTATCGGCTGAAGAAACTCGGGCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.233

98.884

0.783
  pilR Acinetobacter baumannii strain A118

48.802

100

0.5

Multiple sequence alignment