Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABDZ23_RS10340 Genome accession   NZ_CP155621
Coordinates   2301505..2303094 (+) Length   529 a.a.
NCBI ID   WP_247269258.1    Uniprot ID   -
Organism   Pseudomonas koreensis strain BM06     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2296505..2308094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ23_RS10320 (ABDZ23_10320) pgeF 2298300..2299022 (-) 723 WP_247269221.1 peptidoglycan editing factor PgeF -
  ABDZ23_RS10325 (ABDZ23_10325) rluD 2299019..2299981 (-) 963 WP_007963852.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABDZ23_RS10330 (ABDZ23_10330) - 2300132..2301154 (+) 1023 WP_027612809.1 outer membrane protein assembly factor BamD -
  ABDZ23_RS10335 (ABDZ23_10335) - 2301282..2301515 (+) 234 WP_183786036.1 PP0621 family protein -
  ABDZ23_RS10340 (ABDZ23_10340) pilS 2301505..2303094 (+) 1590 WP_247269258.1 ATP-binding protein Regulator
  ABDZ23_RS10345 (ABDZ23_10345) pilR 2303091..2304437 (+) 1347 WP_247269222.1 sigma-54 dependent transcriptional regulator Regulator
  ABDZ23_RS10350 (ABDZ23_10350) thiO 2304553..2305653 (-) 1101 WP_247269223.1 glycine oxidase ThiO -
  ABDZ23_RS10355 (ABDZ23_10355) - 2305711..2306112 (-) 402 WP_247269224.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58519.20 Da        Isoelectric Point: 6.8659

>NTDB_id=998087 ABDZ23_RS10340 WP_247269258.1 2301505..2303094(+) (pilS) [Pseudomonas koreensis strain BM06]
MVAEVANADRKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSADDDLLRSGSWLYLVLNILLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAIANTLLRRRIGLLIAAIGALGIVGSSFLLGFSHPLSANDYLQAGPLG
ALCFAASLLVQGLIRRLEVSENLAEQRASEVTSLEALNALILQRMRTGILVLDEQRRVQLANHSAKNLLAQSHLEGHLIS
DYSPALVERLQLWLSNPTLRPQSLKIPGNGLELQPSFIALDQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEHFVAESREQASER
QSIHLRINSGDFITLMDPDQLTQILDNLLRNGWRHSALLHQQAEVWLALFVDPDSQLAVLEVQDNGPGVPSDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=998087 ABDZ23_RS10340 WP_247269258.1 2301505..2303094(+) (pilS) [Pseudomonas koreensis strain BM06]
GTGGTCGCTGAGGTCGCCAACGCCGACCGTAAACAGGCTCAGCGCCTGCTGCGCCTGTATCATCTCTACCGTTTGAGCGT
CGGCATCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCAGCCGACGACGATCTGCTGCGCA
GCGGCAGTTGGTTGTATCTGGTGCTGAACATTCTGCTGGTGGTGTTTCTGGAGAACACCCGCCGCCCGGCGCAGTTGTTC
ACCCTGGCCTTGGTCGATGTGCTGTTGCTGTGCGGCCTGTTCTACGCGGCGGGCGGCGTGGCCAGCGCCATCGGCAACCT
GTTGATTGTCTCGGTGGCGATCGCCAACACCCTGCTGCGCCGGCGCATCGGCCTGCTGATTGCCGCCATCGGCGCACTCG
GCATTGTCGGCTCCAGCTTTCTGCTGGGCTTCAGTCACCCCCTGAGCGCCAATGACTATCTGCAAGCCGGGCCCCTCGGC
GCTTTGTGTTTTGCCGCGTCGTTGCTGGTCCAGGGCCTGATCCGGCGTCTGGAAGTCAGCGAAAATCTCGCCGAACAGCG
TGCCAGCGAAGTCACCAGTCTTGAAGCCCTCAACGCCCTGATTCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACG
AACAGCGCCGGGTACAGCTGGCCAATCACAGCGCGAAAAATCTGTTGGCCCAGTCGCATCTTGAAGGGCATTTGATCAGC
GACTACTCGCCGGCATTAGTCGAGCGTCTGCAGCTGTGGCTGAGCAACCCGACCCTGCGCCCGCAGAGCCTGAAGATCCC
CGGCAACGGCCTGGAACTGCAACCCAGCTTCATCGCCCTCGACCAGAGTCCCAACCAGCAAACCCTGGTGTTCCTCGAAG
ATCTGGCGCAAATCGCTCAGCAAGCCCAGCAGCTCAAACTCGCCGCACTGGGGCGTCTGACTGCCGGCATCTCCCATGAA
ATCCGCAATCCACTGGGCGCCATCAGTCATGCCGCGCAGCTATTGGCGGAGTCCGAGGAACTCGATAGCGCCGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCGCGCCGCCAGC
AAAGCGCTCCGCAACGGCTGGATCTCAAACCGTGGCTGGAACACTTTGTTGCCGAGAGCCGCGAGCAGGCGAGCGAGCGC
CAGTCGATTCATTTGCGGATCAATTCCGGGGACTTCATCACGTTGATGGATCCCGACCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGGCACAGCGCCCTGCTGCACCAGCAGGCCGAAGTCTGGCTGGCGCTGTTCGTCGACCCCG
ACAGCCAGCTGGCGGTGCTCGAAGTACAGGACAACGGCCCCGGTGTCCCGTCCGATCAGCAGGCGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAAGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599

Multiple sequence alignment