Detailed information NTG0998080

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ABDZ23_RS06930
• Genome accession: NZ_CP155621
• Coordinates: 1569498..1571711 (-)
• Length: 737 a.a.
• NCBI ID: WP_247268136.1
• Uniprot ID: -
• Organism: Pseudomonas koreensis strain BM06
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1564498..1576711

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDZ23_RS06895 (ABDZ23_06895)	murB	1564868..1565887 (-)	1020	WP_134787080.1	UDP-N-acetylmuramate dehydrogenase	-
ABDZ23_RS06900 (ABDZ23_06900)	-	1565884..1566348 (-)	465	WP_007967581.1	low molecular weight protein-tyrosine-phosphatase	-
ABDZ23_RS06905 (ABDZ23_06905)	kdsB	1566348..1567112 (-)	765	WP_247268138.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABDZ23_RS06910 (ABDZ23_06910)	-	1567109..1567294 (-)	186	WP_003174668.1	Trm112 family protein	-
ABDZ23_RS06915 (ABDZ23_06915)	lpxK	1567316..1568326 (-)	1011	WP_247268137.1	tetraacyldisaccharide 4'-kinase	-
ABDZ23_RS06920 (ABDZ23_06920)	-	1568326..1568754 (-)	429	WP_027612340.1	biopolymer transporter ExbD	-
ABDZ23_RS06925 (ABDZ23_06925)	exbB	1568751..1569386 (-)	636	WP_003227083.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ABDZ23_RS06930 (ABDZ23_06930)	comA	1569498..1571711 (-)	2214	WP_247268136.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ABDZ23_RS06935 (ABDZ23_06935)	-	1571848..1572366 (+)	519	WP_097088476.1	DUF2062 domain-containing protein	-
ABDZ23_RS06940 (ABDZ23_06940)	-	1572507..1573286 (-)	780	WP_027612336.1	ABC transporter permease	-
ABDZ23_RS06945 (ABDZ23_06945)	-	1573283..1574215 (-)	933	WP_027612335.1	ABC transporter ATP-binding protein	-
ABDZ23_RS06950 (ABDZ23_06950)	-	1574349..1574972 (-)	624	WP_096794868.1	glutathione S-transferase	-
ABDZ23_RS06955 (ABDZ23_06955)	-	1575016..1575675 (-)	660	WP_247268135.1	transglutaminase family protein	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 81240.67 Da
• Isoelectric Point: 10.5358

>NTDB_id=998080 ABDZ23_RS06930 WP_247268136.1 1569498..1571711(-) (comA) [Pseudomonas koreensis strain BM06]
MRTGMMALAVGLLVPVFLPVLPPVGLMMLLPLVGLMLLPFRSYPLAFLLFGFTWACVSAQWALNDRLPAVLDGETRWVEG
RVVGLPQNSEGVVRFELADARSRHEKLPSLMRLAWYAGPPLNSGERWRLAVKLRRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEANWAWRDSIRQRLMAVDAQGRGGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGMLAAVIYLL
VAGLARYGWWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFDALLLLDPL
ASLRPGLWLSFAAVGILIFTFGGRLGAWKWWQTWTRAQWLIALGLCPLLLALNLPISLSGPLANLLAVPWVSLLVLPPAL
LGTLLLPVPYVGAGLLWLAGGLIDWLFRGLSLIAGAWPAWISPSLPWWALLIGCLGAVLLLLPRGVPLRPLGWPLLLILL
APPRERVAEGQADVWQLDVGQGLAILIRTRHHALLYDAGPRFGEFDLGERVVLPALHKLGVNRIDLMLLSHADADHAGGA
LAVSRGLKVTRVISGDSPGLPAILRAEACESGRQWQWDGVRFQLWQWSAAHDSNQRSCVLQIEANGERLLLTGDIDTAAE
RVLLESPLALPTQWLQAPHHGSRSSSSMALLRALRPHSVLISRGQGNSFGHPHPLVLARYRQQGLRIYDSAQHGAIQLRL
GSFQAPWLMRQQRRFWR

Nucleotide

• Length: 2214 bp

>NTDB_id=998080 ABDZ23_RS06930 WP_247268136.1 1569498..1571711(-) (comA) [Pseudomonas koreensis strain BM06]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGTTCCGGTTTTTTTGCCGGTTTTACCGCCGGTCGGGTTGAT
GATGTTGTTGCCGTTGGTGGGACTGATGTTGCTGCCGTTTCGCAGCTATCCCCTGGCGTTTCTGCTGTTCGGTTTCACCT
GGGCGTGCGTCAGTGCGCAATGGGCATTGAATGATCGTCTGCCCGCAGTGCTTGATGGCGAAACCCGTTGGGTTGAGGGG
CGGGTGGTAGGTTTGCCGCAAAACAGCGAGGGCGTGGTGCGTTTCGAGTTGGCCGATGCTCGTTCGCGCCACGAGAAATT
GCCGTCGTTGATGCGTCTGGCGTGGTACGCCGGACCACCGCTCAACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAGCTCA
GGCGCCCCGGTGGTTTGCTCAATCCCGACGCCTTCGATTACGAAGCCTGGCTGTTGGCGCAACGCATCGGCGCGACCGGC
ACGATCAAGGATGGTCAGCGCCTGGCCGAGGCAAACTGGGCATGGCGCGACAGCATTCGTCAGCGCTTGATGGCAGTCGA
TGCCCAAGGCCGGGGCGGTGCATTGGCGGCGCTAGTGCTCGGCGACGGCTCCGGGCTCAGTCGCGAGGATTGGCAGATCC
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGTCAACACATCGGGATGTTGGCGGCGGTCATCTATCTGTTG
GTCGCCGGGCTGGCGCGCTACGGCTGGTGGCCGCTGCGCTGGCCATGGCTGCCATGGGCCTGCGGCCTGGCGTTTGCCGC
GGCGCTCGGTTACGGCTTGCTCGCCGGGTTTGACGTGCCGGTGCAACGGGCCTGCGTGATGGTCGGGCTGGTGTTGTTGT
GGCGCCTGCGCTTTCGCCATCTCGGCGCGTGGTGGCCGCTGTTGCTGGCATTCGATGCGTTGCTGTTGCTCGACCCGTTA
GCCAGTTTGCGTCCGGGTTTGTGGCTGTCGTTCGCCGCGGTGGGGATTTTGATTTTCACCTTCGGCGGGCGACTCGGTGC
GTGGAAATGGTGGCAGACCTGGACCCGCGCGCAATGGCTGATTGCGCTGGGTCTGTGCCCGCTGCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGGCCATTGGCAAATCTGCTCGCGGTGCCGTGGGTCAGTCTGCTGGTGCTGCCACCGGCGCTG
CTCGGCACGCTGTTGTTGCCGGTGCCTTACGTCGGTGCAGGCTTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TCGTGGCTTGTCGCTGATCGCCGGGGCTTGGCCAGCGTGGATCTCGCCGTCGCTGCCGTGGTGGGCCTTGTTGATTGGCT
GTCTCGGCGCCGTGTTGTTGCTGTTGCCGCGTGGGGTGCCGTTGCGACCGTTGGGCTGGCCGTTGTTGTTGATTCTGCTG
GCGCCGCCGCGCGAGCGAGTGGCCGAGGGCCAGGCCGATGTCTGGCAGCTCGATGTCGGTCAGGGCCTGGCGATCCTGAT
CCGCACGCGTCATCACGCGTTGCTCTACGACGCCGGTCCACGCTTCGGCGAATTCGATCTGGGGGAGCGGGTGGTGCTGC
CGGCGCTGCACAAACTGGGGGTCAACCGCATCGATCTGATGCTGCTCAGTCATGCCGATGCCGACCATGCCGGTGGTGCG
TTGGCAGTATCGCGGGGCCTGAAAGTGACGCGGGTGATCAGCGGCGATTCGCCGGGTCTGCCCGCCATCCTGCGGGCCGA
GGCCTGTGAAAGCGGGCGCCAATGGCAGTGGGACGGGGTCCGGTTTCAGCTGTGGCAATGGTCGGCGGCCCATGACAGCA
ATCAGCGCTCCTGTGTGTTGCAGATCGAGGCCAATGGCGAGCGTCTGCTGCTGACCGGTGATATCGACACGGCTGCCGAA
CGGGTGTTGCTGGAGAGTCCGTTGGCGCTGCCGACGCAATGGCTGCAAGCACCCCACCACGGCAGCCGCAGTTCCTCATC
GATGGCTTTGCTGCGGGCATTACGCCCGCATTCGGTGCTGATCTCCAGGGGGCAGGGCAATTCGTTCGGTCATCCACACC
CGCTGGTGCTTGCGCGTTACCGCCAGCAAGGGCTGCGCATCTACGACAGCGCGCAGCACGGCGCCATTCAGCTGCGCCTG
GGCAGCTTTCAGGCGCCGTGGCTGATGCGTCAACAACGGCGTTTCTGGCGCTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.699	97.422	0.601
comA	Ralstonia pseudosolanacearum GMI1000	34.483	100	0.366