Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABDZ23_RS06925 Genome accession   NZ_CP155621
Coordinates   1568751..1569386 (-) Length   211 a.a.
NCBI ID   WP_003227083.1    Uniprot ID   -
Organism   Pseudomonas koreensis strain BM06     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1563751..1574386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ23_RS06890 (ABDZ23_06890) - 1564002..1564472 (-) 471 WP_096794874.1 (2Fe-2S)-binding protein -
  ABDZ23_RS06895 (ABDZ23_06895) murB 1564868..1565887 (-) 1020 WP_134787080.1 UDP-N-acetylmuramate dehydrogenase -
  ABDZ23_RS06900 (ABDZ23_06900) - 1565884..1566348 (-) 465 WP_007967581.1 low molecular weight protein-tyrosine-phosphatase -
  ABDZ23_RS06905 (ABDZ23_06905) kdsB 1566348..1567112 (-) 765 WP_247268138.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABDZ23_RS06910 (ABDZ23_06910) - 1567109..1567294 (-) 186 WP_003174668.1 Trm112 family protein -
  ABDZ23_RS06915 (ABDZ23_06915) lpxK 1567316..1568326 (-) 1011 WP_247268137.1 tetraacyldisaccharide 4'-kinase -
  ABDZ23_RS06920 (ABDZ23_06920) - 1568326..1568754 (-) 429 WP_027612340.1 biopolymer transporter ExbD -
  ABDZ23_RS06925 (ABDZ23_06925) exbB 1568751..1569386 (-) 636 WP_003227083.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABDZ23_RS06930 (ABDZ23_06930) comA 1569498..1571711 (-) 2214 WP_247268136.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABDZ23_RS06935 (ABDZ23_06935) - 1571848..1572366 (+) 519 WP_097088476.1 DUF2062 domain-containing protein -
  ABDZ23_RS06940 (ABDZ23_06940) - 1572507..1573286 (-) 780 WP_027612336.1 ABC transporter permease -
  ABDZ23_RS06945 (ABDZ23_06945) - 1573283..1574215 (-) 933 WP_027612335.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22917.00 Da        Isoelectric Point: 6.8768

>NTDB_id=998079 ABDZ23_RS06925 WP_003227083.1 1568751..1569386(-) (exbB) [Pseudomonas koreensis strain BM06]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=998079 ABDZ23_RS06925 WP_003227083.1 1568751..1569386(-) (exbB) [Pseudomonas koreensis strain BM06]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTCGC
CGAGCGTCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATTAAGGACA
AGCAGCTCAATAAAGAAAAGCTCAAGGAATTGCGCGCCAACTCGCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCGCGGGTGATTCACGAGCTCGAACGCTACGT
CAACGCGCTGGGCACGATTGCCGCCATGTCGCCGTTGCTGGGCCTGTTGGGCACGGTATTGGGCATGATCGACATTTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAACGCCTCGGTCCTGGCCGGCGGTATTTCCAAGGCACTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839

Multiple sequence alignment