Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ABDX87_RS05795 Genome accession   NZ_CP155619
Coordinates   1309378..1311594 (-) Length   738 a.a.
NCBI ID   WP_346832012.1    Uniprot ID   -
Organism   Pseudomonas abietaniphila strain BHJ04     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1304378..1316594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDX87_RS05760 (ABDX87_05760) - 1304451..1305044 (-) 594 WP_346832007.1 nucleotidyltransferase family protein -
  ABDX87_RS05765 (ABDX87_05765) murB 1305167..1306186 (-) 1020 WP_346832008.1 UDP-N-acetylmuramate dehydrogenase -
  ABDX87_RS05770 (ABDX87_05770) kdsB 1306233..1306997 (-) 765 WP_346832009.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABDX87_RS05775 (ABDX87_05775) - 1306994..1307179 (-) 186 WP_003174668.1 Trm112 family protein -
  ABDX87_RS05780 (ABDX87_05780) lpxK 1307197..1308192 (-) 996 WP_346832010.1 tetraacyldisaccharide 4'-kinase -
  ABDX87_RS05785 (ABDX87_05785) - 1308192..1308623 (-) 432 WP_346832011.1 biopolymer transporter ExbD -
  ABDX87_RS05790 (ABDX87_05790) exbB 1308620..1309294 (-) 675 WP_074757729.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABDX87_RS05795 (ABDX87_05795) comA 1309378..1311594 (-) 2217 WP_346832012.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABDX87_RS05800 (ABDX87_05800) - 1311749..1312264 (+) 516 WP_346832013.1 DUF2062 domain-containing protein -
  ABDX87_RS05805 (ABDX87_05805) - 1312423..1313202 (-) 780 WP_346832014.1 ABC transporter permease -
  ABDX87_RS05810 (ABDX87_05810) - 1313199..1314131 (-) 933 WP_346832015.1 ABC transporter ATP-binding protein -
  ABDX87_RS05815 (ABDX87_05815) - 1314335..1314958 (-) 624 WP_346832016.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80722.80 Da        Isoelectric Point: 8.3987

>NTDB_id=998030 ABDX87_RS05795 WP_346832012.1 1309378..1311594(-) (comA) [Pseudomonas abietaniphila strain BHJ04]
MRTGMLALALGLLVLRFLPALPPVWLMVAMPIVALMLLPFRTYPVAFFLFGVTWGCVSAKSALDDRLPERLDGQTLWLEG
KVVGLPHTVDGVVRFQLQDPVSRRTRLPGQLRIAWYGGPAVQSGEHWRLAVKLKRPGGLANPGAFDYQAWLLAQRIGATG
TVVDGQLLRATTHSWRDTIRQRLLAVDAQGRQGGLSALVLGDDSGLSPADWQVLQDTGTVHLLVISGTHVGLLAGLLYGL
VAGLARWGLWPRVLPWLPSACVLALSGALAYGYLAGFEVPVQRACVMLGLVLLWRLRFRHLGAIWPMLIALNLVLIVEPL
ISLRPGFWLSFVAVGILMVIFGGRLGAWRWLQSWSRAQWLIALGLLPVLLALNLPVSVSGPLVNLLAVPWVSIFILPLAL
FGTFFLAVPWLGESLLWLAGGSMNALFVVLAIAAEAAPAWTGPTTPFWVWPLCLLGALLLLLPSGVPLRALGWPLLLLCV
FVPQERIPSGEVEVLQLDVGQGLAILLQTREHTLLYDAGPRFGEFDIGERVVLPAIRRAGIRHLDMMLLSHADADHAGGA
PAIHQALPVSRILAGDAARMPAELPVEPCRNGETWAWDEVTFSTWIWEQAAEGNQASCVLSVDAKGERLLLTGDIDVPAE
RAMLEQGFDVRADWLQAPHHGSRSSSSKALLQAVSPKGVLISRGRNNAFGHPHPLVMSRYRWFGVETYDSAELGAITLQL
GRFEGVDAERRERRFWRE

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=998030 ABDX87_RS05795 WP_346832012.1 1309378..1311594(-) (comA) [Pseudomonas abietaniphila strain BHJ04]
ATGCGCACAGGGATGCTGGCGCTTGCACTGGGACTGCTCGTCCTGCGTTTTTTACCGGCATTACCGCCGGTCTGGTTAAT
GGTGGCGATGCCTATCGTCGCCCTGATGCTGCTGCCGTTTCGCACGTATCCGGTGGCGTTTTTTCTCTTCGGGGTGACGT
GGGGCTGCGTGTCCGCCAAATCCGCGCTCGATGATCGGCTGCCCGAACGCCTCGATGGCCAGACGCTATGGCTGGAAGGC
AAGGTCGTCGGTTTGCCACATACCGTTGACGGAGTGGTCCGTTTTCAGCTGCAAGACCCGGTGTCTCGCCGAACACGGCT
GCCTGGGCAGCTGCGCATTGCCTGGTACGGCGGGCCTGCCGTGCAAAGCGGCGAACACTGGCGGCTGGCGGTGAAACTCA
AGCGCCCTGGCGGCCTGGCCAATCCCGGTGCGTTCGACTATCAGGCGTGGCTCTTGGCGCAGCGTATTGGCGCGACGGGC
ACCGTGGTGGATGGCCAGTTACTCAGGGCGACAACCCACTCGTGGCGCGACACGATTCGTCAACGCTTGCTGGCCGTCGA
TGCTCAGGGTCGGCAGGGCGGTTTGTCCGCGCTGGTGCTGGGCGACGACTCAGGGTTGAGTCCAGCCGATTGGCAAGTGT
TGCAGGACACCGGCACGGTCCATTTGCTGGTGATTTCCGGCACGCATGTCGGTTTGCTGGCCGGGTTGCTGTATGGGCTG
GTGGCCGGGCTGGCGCGATGGGGGCTATGGCCACGCGTGCTGCCCTGGTTACCGTCGGCCTGCGTACTTGCCTTGAGTGG
CGCATTGGCCTATGGCTATCTGGCAGGCTTCGAGGTTCCGGTACAGCGAGCCTGCGTCATGCTCGGGCTGGTGTTGCTGT
GGCGGTTGCGCTTTCGGCACCTGGGTGCGATCTGGCCGATGCTGATCGCGTTGAATCTGGTGCTGATTGTCGAGCCGTTG
ATCAGCCTGCGTCCGGGATTTTGGCTGTCGTTCGTGGCCGTCGGCATTCTGATGGTGATCTTTGGCGGACGTCTGGGCGC
CTGGCGTTGGCTGCAGAGTTGGTCTCGGGCGCAATGGCTGATCGCCCTCGGGCTCTTGCCGGTCTTGCTGGCTTTGAACC
TGCCGGTCAGCGTGAGCGGCCCGTTGGTCAATCTGCTCGCGGTGCCGTGGGTCAGCATTTTTATCCTGCCTCTGGCGCTG
TTCGGCACGTTTTTTCTGGCCGTTCCGTGGCTAGGCGAGAGCTTGCTCTGGCTGGCGGGCGGGTCGATGAACGCGCTGTT
CGTCGTTCTGGCGATCGCGGCCGAGGCGGCACCGGCATGGACCGGCCCGACGACGCCGTTCTGGGTGTGGCCATTGTGCC
TGCTGGGAGCGCTGCTGCTTTTATTACCCAGCGGCGTGCCATTGCGCGCACTGGGTTGGCCCCTGTTGCTGCTCTGCGTG
TTTGTCCCGCAGGAGCGCATTCCTTCAGGTGAAGTTGAAGTGCTGCAACTGGACGTCGGCCAAGGGCTTGCGATTCTGTT
GCAAACTCGTGAACACACGCTGCTCTACGACGCCGGACCGCGCTTTGGCGAGTTCGACATCGGCGAGCGCGTGGTCTTGC
CCGCGATTCGTCGTGCAGGAATAAGGCATCTGGACATGATGCTGCTCAGTCACGCCGACGCCGATCATGCCGGCGGGGCC
CCGGCGATTCATCAGGCACTGCCCGTGAGCAGAATCCTGGCGGGCGACGCTGCCCGGATGCCGGCTGAGTTGCCTGTCGA
GCCCTGCCGCAACGGTGAAACCTGGGCCTGGGACGAGGTGACGTTTTCCACCTGGATCTGGGAGCAGGCGGCGGAGGGCA
ATCAGGCATCGTGCGTGCTGAGTGTCGACGCGAAGGGTGAACGCTTGTTGTTGACGGGAGACATCGACGTTCCTGCCGAG
CGGGCGATGCTGGAGCAGGGTTTTGATGTGCGTGCCGACTGGTTGCAAGCGCCTCATCACGGGAGCCGGAGTTCATCGTC
CAAGGCGCTGCTGCAGGCGGTCTCTCCTAAGGGCGTGCTGATCTCCCGAGGCCGGAACAATGCGTTCGGTCACCCGCATC
CGTTGGTGATGTCTCGCTATCGCTGGTTCGGCGTTGAAACCTACGACAGCGCTGAACTGGGTGCTATCACATTGCAATTA
GGCAGGTTCGAAGGCGTGGACGCCGAGCGTAGGGAAAGACGCTTCTGGCGTGAGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Domain of unknown function (DUF4131) (DUF4131)

(22-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.173

97.019

0.593
  comA Ralstonia pseudosolanacearum GMI1000

32.663

100

0.374

Multiple sequence alignment