Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABDX87_RS05790 Genome accession   NZ_CP155619
Coordinates   1308620..1309294 (-) Length   224 a.a.
NCBI ID   WP_074757729.1    Uniprot ID   A0A1G8PMU1
Organism   Pseudomonas abietaniphila strain BHJ04     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1303620..1314294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDX87_RS05760 (ABDX87_05760) - 1304451..1305044 (-) 594 WP_346832007.1 nucleotidyltransferase family protein -
  ABDX87_RS05765 (ABDX87_05765) murB 1305167..1306186 (-) 1020 WP_346832008.1 UDP-N-acetylmuramate dehydrogenase -
  ABDX87_RS05770 (ABDX87_05770) kdsB 1306233..1306997 (-) 765 WP_346832009.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABDX87_RS05775 (ABDX87_05775) - 1306994..1307179 (-) 186 WP_003174668.1 Trm112 family protein -
  ABDX87_RS05780 (ABDX87_05780) lpxK 1307197..1308192 (-) 996 WP_346832010.1 tetraacyldisaccharide 4'-kinase -
  ABDX87_RS05785 (ABDX87_05785) - 1308192..1308623 (-) 432 WP_346832011.1 biopolymer transporter ExbD -
  ABDX87_RS05790 (ABDX87_05790) exbB 1308620..1309294 (-) 675 WP_074757729.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABDX87_RS05795 (ABDX87_05795) comA 1309378..1311594 (-) 2217 WP_346832012.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABDX87_RS05800 (ABDX87_05800) - 1311749..1312264 (+) 516 WP_346832013.1 DUF2062 domain-containing protein -
  ABDX87_RS05805 (ABDX87_05805) - 1312423..1313202 (-) 780 WP_346832014.1 ABC transporter permease -
  ABDX87_RS05810 (ABDX87_05810) - 1313199..1314131 (-) 933 WP_346832015.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24371.61 Da        Isoelectric Point: 7.3251

>NTDB_id=998029 ABDX87_RS05790 WP_074757729.1 1308620..1309294(-) (exbB) [Pseudomonas abietaniphila strain BHJ04]
MWELVKSGGWMMLPIILSSIAAVGIIIERLWTLRASRITPPHLLGQVWRWIQDKQLSSDKLKELRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLATLGTIAAMAPLLGLLGTVLGMIDIFSSFTSTGMTGNAGMLASGIAKALICTA
SGLTVAIPTIFFHRYLQNRVDELVVGMEQEAIKLVEVVQGDRDVDLTDAKPDLKAAARGEGRKK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=998029 ABDX87_RS05790 WP_074757729.1 1308620..1309294(-) (exbB) [Pseudomonas abietaniphila strain BHJ04]
GTGTGGGAGCTGGTCAAATCTGGTGGCTGGATGATGCTACCGATCATTTTGAGTTCCATCGCCGCCGTCGGAATCATCAT
CGAGCGTCTGTGGACCTTGCGCGCCAGCCGCATTACGCCGCCGCATCTGCTCGGTCAGGTGTGGCGCTGGATTCAGGACA
AACAATTGAGCAGCGACAAGCTCAAGGAACTGCGCGCCGACTCCCCGCTGGGTGAGATTCTCGCGGCCGGCCTGGCCAAC
TCCCGTCACGGTCGCGAGATCATGAAGGAGTGCATTGAGGAAGCCGCCGCCCGGGTGATTCACGAGCTGGAGCGTTACCT
CGCCACGCTTGGCACCATCGCCGCCATGGCCCCGCTGCTGGGTCTGCTCGGCACCGTGCTGGGCATGATCGACATCTTCA
GTTCGTTCACCAGCACCGGCATGACCGGTAACGCGGGCATGTTGGCCAGTGGTATCGCCAAGGCGCTGATCTGCACGGCG
TCCGGCCTGACCGTCGCGATCCCGACCATCTTCTTCCACCGCTACCTGCAAAACCGCGTCGACGAGTTGGTGGTCGGCAT
GGAACAGGAAGCGATCAAACTGGTGGAAGTGGTGCAAGGCGATCGTGACGTGGATCTGACCGACGCCAAGCCTGACCTCA
AGGCTGCCGCACGCGGCGAGGGTCGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G8PMU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80

93.75

0.75

Multiple sequence alignment