Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AAHK14_RS08205 Genome accession   NZ_CP155576
Coordinates   1621178..1622074 (-) Length   298 a.a.
NCBI ID   WP_065274066.1    Uniprot ID   A0A1B8PVD8
Organism   Moraxella sp. K1664     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1616178..1627074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHK14_RS08190 (AAHK14_08190) - 1617187..1618041 (-) 855 WP_065256709.1 WG repeat-containing protein -
  AAHK14_RS08195 (AAHK14_08195) glnD 1618100..1620886 (-) 2787 WP_065256708.1 [protein-PII] uridylyltransferase -
  AAHK14_RS08205 (AAHK14_08205) pilD 1621178..1622074 (-) 897 WP_065274066.1 A24 family peptidase Machinery gene
  AAHK14_RS08210 (AAHK14_08210) pilC 1622074..1623297 (-) 1224 WP_065256707.1 type II secretion system F family protein Machinery gene
  AAHK14_RS08215 (AAHK14_08215) recG 1623646..1625751 (+) 2106 WP_065256706.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 32635.96 Da        Isoelectric Point: 8.8559

>NTDB_id=997920 AAHK14_RS08205 WP_065274066.1 1621178..1622074(-) (pilD) [Moraxella sp. K1664]
MNFLSENFYFALALAGLLGLCVGSFLNVVIHRTPLIMNREWRKDTAWFLGTQSDLNPNHVKPIQETIANDVPISLSFPPS
RCPKCNHQIRAYENIPVLSWLILLRGKCSSCGNPISMRYPLVELITAPLSVLVIYMLGANVAGVLGLIYLWILIALTGID
FDTQLLPDRLVFPLGMIGLMVNTQNIFTSLSSAVWGGLLGFLSFWSVAKLYALITKKDGMGAGDFKLLGAIGAWLGVGML
PFLILVSAVLGSIVGVVLMRLRGESRAFAFGPYIAIAGIIALLWGHDVMGWYLGMYKI

Nucleotide


Download         Length: 897 bp        

>NTDB_id=997920 AAHK14_RS08205 WP_065274066.1 1621178..1622074(-) (pilD) [Moraxella sp. K1664]
ATGAATTTTTTATCAGAGAACTTTTATTTTGCCCTAGCCCTAGCTGGACTGCTGGGGCTTTGTGTTGGTTCATTTTTAAA
TGTGGTCATTCACCGCACACCACTCATCATGAACCGAGAGTGGCGTAAAGATACAGCATGGTTTTTGGGTACACAGTCCG
ACCTTAACCCCAATCATGTCAAGCCCATTCAAGAGACGATTGCCAATGACGTACCCATTAGCTTATCCTTTCCGCCGTCT
CGTTGCCCCAAATGCAACCACCAAATCCGTGCTTATGAAAACATTCCTGTATTAAGCTGGCTTATTCTATTGCGTGGTAA
ATGCTCCAGTTGTGGCAACCCCATTAGTATGCGTTATCCATTAGTGGAACTCATCACTGCCCCATTGTCTGTCTTGGTCA
TCTATATGCTGGGGGCAAATGTGGCAGGCGTGTTGGGGCTGATTTACCTATGGATACTCATTGCCCTAACTGGCATCGAT
TTTGACACACAACTACTGCCCGACCGCTTGGTTTTCCCGCTGGGTATGATAGGCTTAATGGTAAACACCCAAAATATCTT
TACTTCACTAAGCTCTGCGGTGTGGGGCGGACTGCTTGGTTTTTTATCCTTTTGGTCAGTTGCCAAACTCTATGCACTCA
TCACCAAAAAAGATGGCATGGGAGCAGGCGATTTTAAACTTCTAGGAGCGATTGGGGCGTGGCTGGGTGTGGGTATGTTG
CCCTTTTTGATTCTTGTATCTGCTGTACTAGGCTCTATCGTGGGTGTGGTTTTGATGAGACTGCGTGGTGAAAGCCGTGC
CTTTGCCTTTGGTCCTTATATTGCCATTGCAGGTATCATTGCCCTATTATGGGGGCATGATGTTATGGGTTGGTATTTAG
GCATGTATAAAATTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-135)

Type IV leader peptidase family (Peptidase_A24)

(148-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8PVD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

51.049

95.973

0.49
  pilD Acinetobacter baumannii D1279779

51.049

95.973

0.49
  pilD Vibrio cholerae strain A1552

47.458

98.993

0.47
  pilD Vibrio campbellii strain DS40M4

45.965

95.638

0.44
  pilD Neisseria gonorrhoeae MS11

45.357

93.96

0.426

Multiple sequence alignment