Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABER85_RS09740 Genome accession   NZ_CP155547
Coordinates   1996880..1997698 (-) Length   272 a.a.
NCBI ID   WP_247791466.1    Uniprot ID   -
Organism   Acinetobacter sp. 8_A20231192     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1991880..2002698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABER85_RS09725 (ABER85_09725) pilE 1992147..1992572 (-) 426 WP_000788345.1 type IV pilin protein Machinery gene
  ABER85_RS09730 (ABER85_09730) pilY2 1992569..1993051 (-) 483 WP_001046490.1 type IV pilin protein Machinery gene
  ABER85_RS09735 (ABER85_09735) pilY1 1993062..1996868 (-) 3807 WP_272235813.1 PilC/PilY family type IV pilus protein Machinery gene
  ABER85_RS09740 (ABER85_09740) pilX 1996880..1997698 (-) 819 WP_247791466.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABER85_RS09745 (ABER85_09745) pilW 1997695..1998696 (-) 1002 WP_272235812.1 PilW family protein Machinery gene
  ABER85_RS09750 (ABER85_09750) pilV 1998697..1999257 (-) 561 WP_247791464.1 type IV pilus modification protein PilV Machinery gene
  ABER85_RS09755 (ABER85_09755) fimU 1999251..1999724 (-) 474 WP_346534468.1 GspH/FimT family pseudopilin Machinery gene
  ABER85_RS09760 (ABER85_09760) ispH 1999894..2000844 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABER85_RS09765 (ABER85_09765) gmk 2000967..2001596 (+) 630 WP_000015937.1 guanylate kinase -
  ABER85_RS09770 (ABER85_09770) rpoZ 2001669..2001947 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABER85_RS09775 (ABER85_09775) - 2001986..2002116 (+) 131 Protein_1916 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28831.67 Da        Isoelectric Point: 6.2277

>NTDB_id=997647 ABER85_RS09740 WP_247791466.1 1996880..1997698(-) (pilX) [Acinetobacter sp. 8_A20231192]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=997647 ABER85_RS09740 WP_247791466.1 1996880..1997698(-) (pilX) [Acinetobacter sp. 8_A20231192]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AACGTGATTGGTGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGTGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGAGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAAT
TACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment