Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABER85_RS09755 Genome accession   NZ_CP155547
Coordinates   1999251..1999724 (-) Length   157 a.a.
NCBI ID   WP_346534468.1    Uniprot ID   -
Organism   Acinetobacter sp. 8_A20231192     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1994251..2004724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABER85_RS09740 (ABER85_09740) pilX 1996880..1997698 (-) 819 WP_247791466.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABER85_RS09745 (ABER85_09745) pilW 1997695..1998696 (-) 1002 WP_272235812.1 PilW family protein Machinery gene
  ABER85_RS09750 (ABER85_09750) pilV 1998697..1999257 (-) 561 WP_247791464.1 type IV pilus modification protein PilV Machinery gene
  ABER85_RS09755 (ABER85_09755) fimU 1999251..1999724 (-) 474 WP_346534468.1 GspH/FimT family pseudopilin Machinery gene
  ABER85_RS09760 (ABER85_09760) ispH 1999894..2000844 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABER85_RS09765 (ABER85_09765) gmk 2000967..2001596 (+) 630 WP_000015937.1 guanylate kinase -
  ABER85_RS09770 (ABER85_09770) rpoZ 2001669..2001947 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABER85_RS09775 (ABER85_09775) - 2001986..2002116 (+) 131 Protein_1916 hypothetical protein -
  ABER85_RS09780 (ABER85_09780) - 2002157..2004262 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16821.43 Da        Isoelectric Point: 8.5355

>NTDB_id=997650 ABER85_RS09755 WP_346534468.1 1999251..1999724(-) (fimU) [Acinetobacter sp. 8_A20231192]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINALSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKIIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=997650 ABER85_RS09755 WP_346534468.1 1999251..1999724(-) (fimU) [Acinetobacter sp. 8_A20231192]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACGCTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAATCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment