Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   ABC806_RS01390 Genome accession   NZ_CP155539
Coordinates   260481..261491 (+) Length   336 a.a.
NCBI ID   WP_000990607.1    Uniprot ID   A0A0B7LZL8
Organism   Streptococcus pneumoniae TIGR4     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 255481..266491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC806_RS01360 (ABC806_01360) - 256352..256558 (+) 207 Protein_238 hypothetical protein -
  ABC806_RS01365 (ABC806_01365) - 256555..256749 (+) 195 WP_000820189.1 hypothetical protein -
  ABC806_RS01370 (ABC806_01370) - 256736..257620 (+) 885 WP_001055978.1 ABC transporter ATP-binding protein -
  ABC806_RS01375 (ABC806_01375) - 257622..258359 (+) 738 WP_000832915.1 ABC transporter permease -
  ABC806_RS01380 (ABC806_01380) - 258359..259456 (+) 1098 WP_000893503.1 sensor histidine kinase -
  ABC806_RS01385 (ABC806_01385) - 259457..260056 (+) 600 WP_000866703.1 response regulator transcription factor -
  ABC806_RS01390 (ABC806_01390) ccpA 260481..261491 (+) 1011 WP_000990607.1 catabolite control protein A Regulator
  ABC806_RS01395 (ABC806_01395) - 261555..262118 (+) 564 WP_001092024.1 hypothetical protein -
  ABC806_RS01400 (ABC806_01400) - 262147..263109 (-) 963 WP_001124777.1 asparaginase -
  ABC806_RS01405 (ABC806_01405) - 263175..264563 (+) 1389 WP_000453137.1 Cof-type HAD-IIB family hydrolase -
  ABC806_RS01410 (ABC806_01410) - 264598..265050 (-) 453 WP_000079148.1 universal stress protein -
  ABC806_RS01415 (ABC806_01415) - 265212..265506 (+) 295 Protein_249 hypothetical protein -

Sequence


Protein


Download         Length: 336 a.a.        Molecular weight: 37073.01 Da        Isoelectric Point: 5.3212

>NTDB_id=997553 ABC806_RS01390 WP_000990607.1 260481..261491(+) (ccpA) [Streptococcus pneumoniae TIGR4]
MNADDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
SLAKGIDDIAEMYKYNIVLANSDEDNEKEVSVVNTLFSKQVDGIIYMGYHLTDKIRSEFSRSRTPIVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLAKENERIAFVSGPLVDDINGKVRLVGYKETLKKAGITYSEGLVFESKYSYDDGYALAERLISSN
ATAAVVTGDELAAGVLNGLADKGVSVPEDFEIITSDDSQISRFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERSSTRKRK

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=997553 ABC806_RS01390 WP_000990607.1 260481..261491(+) (ccpA) [Streptococcus pneumoniae TIGR4]
ATGAATGCAGATGATACAGTAACCATTTATGATGTCGCTCGTGAAGCAGGTGTTTCCATGGCGACGGTCAGCCGTGTGGT
CAATGGCAATAAAAATGTAAAAGAGAATACCCGTAAAAAAGTGCTAGAGGTAATTGATCGTTTGGATTATCGTCCAAATG
CAGTTGCGCGTGGTCTTGCAAGTAAAAAGACAACCACTGTCGGTGTCGTGATTCCAAATATTACCAATGGTTATTTTTCG
AGTTTGGCTAAGGGGATTGATGATATTGCAGAAATGTACAAGTACAATATTGTCCTAGCTAATAGCGATGAAGATAACGA
GAAAGAAGTTTCTGTTGTCAATACCCTCTTTTCAAAGCAGGTAGATGGCATTATCTATATGGGGTATCACTTGACAGATA
AAATTCGCTCAGAATTTTCGCGTTCACGTACTCCGATTGTTCTCGCAGGAACTGTCGATGTTGAGCACCAGTTGCCAAGT
GTCAATATTGACTATAAGCAAGCAACAATTGATGCAGTGAGTTACCTTGCTAAAGAAAATGAGCGTATTGCTTTCGTTAG
CGGTCCGCTAGTGGATGACATCAATGGTAAGGTTCGTTTAGTTGGCTACAAGGAAACCTTGAAAAAAGCAGGAATCACTT
ATAGTGAGGGTTTGGTATTTGAATCTAAATATAGCTATGATGATGGTTACGCCTTAGCAGAGCGTTTGATTTCATCAAAT
GCAACTGCAGCAGTTGTGACAGGTGATGAGTTGGCAGCAGGAGTCTTGAACGGTTTGGCTGATAAGGGTGTTTCTGTGCC
AGAAGATTTTGAAATTATTACTAGTGATGATTCACAAATCTCACGCTTTACCCGTCCAAACTTGACAACGATTGCCCAAC
CTCTTTATGACCTTGGTGCCATTAGTATGCGTATGTTGACCAAGATTATGCATAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGTTTGACAGAACGTAGCTCAACACGAAAACGTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0B7LZL8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

99.702

100

0.997

  ccpA Streptococcus gordonii str. Challis substr. CH1

87.126

99.405

0.866

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

98.512

0.568


Multiple sequence alignment