Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AAH687_RS08830 Genome accession   NZ_CP155530
Coordinates   1775033..1775674 (+) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TN5S8     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1770033..1780674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH687_RS08805 (AAH687_08805) - 1770410..1770763 (-) 354 WP_017358939.1 hypothetical protein -
  AAH687_RS08810 (AAH687_08810) degQ 1771269..1771409 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  AAH687_RS08815 (AAH687_08815) - 1771561..1772484 (+) 924 WP_035389264.1 polyprenyl synthetase family protein -
  AAH687_RS08820 (AAH687_08820) comX 1772462..1772632 (+) 171 WP_017358941.1 competence pheromone ComX -
  AAH687_RS08825 (AAH687_08825) comP 1772646..1774952 (+) 2307 WP_035389261.1 ATP-binding protein Regulator
  AAH687_RS08830 (AAH687_08830) comA 1775033..1775674 (+) 642 WP_007500477.1 response regulator transcription factor Regulator
  AAH687_RS08835 (AAH687_08835) - 1775698..1776087 (+) 390 WP_008345855.1 hotdog fold thioesterase -
  AAH687_RS08840 (AAH687_08840) mnhG 1776178..1776552 (-) 375 WP_008345852.1 monovalent cation/H(+) antiporter subunit G -
  AAH687_RS08845 (AAH687_08845) - 1776536..1776817 (-) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  AAH687_RS08850 (AAH687_08850) - 1776817..1777296 (-) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  AAH687_RS08855 (AAH687_08855) - 1777303..1778781 (-) 1479 WP_346395585.1 Na+/H+ antiporter subunit D -
  AAH687_RS08860 (AAH687_08860) - 1778774..1779115 (-) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  AAH687_RS08865 (AAH687_08865) - 1779115..1779546 (-) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=996950 AAH687_RS08830 WP_007500477.1 1775033..1775674(+) (comA) [Bacillus altitudinis strain TN5S8]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=996950 AAH687_RS08830 WP_007500477.1 1775033..1775674(+) (comA) [Bacillus altitudinis strain TN5S8]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment