Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKY79_RS22170 Genome accession   NZ_CP155469
Coordinates   4466463..4466945 (-) Length   160 a.a.
NCBI ID   WP_063608863.1    Uniprot ID   A0A268RW45
Organism   Shouchella clausii strain FSL M8-0189     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4461463..4471945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY79_RS22150 (MKY79_22150) rplI 4462657..4463100 (-) 444 WP_095253901.1 50S ribosomal protein L9 -
  MKY79_RS22155 (MKY79_22155) - 4463097..4465067 (-) 1971 WP_095253902.1 DHH family phosphoesterase -
  MKY79_RS22160 (MKY79_22160) - 4465097..4465999 (-) 903 WP_095253903.1 YybS family protein -
  MKY79_RS22165 (MKY79_22165) rpsR 4466204..4466437 (-) 234 WP_011248938.1 30S ribosomal protein S18 -
  MKY79_RS22170 (MKY79_22170) ssbA 4466463..4466945 (-) 483 WP_063608863.1 single-stranded DNA-binding protein Machinery gene
  MKY79_RS22175 (MKY79_22175) rpsF 4467016..4467303 (-) 288 WP_011248940.1 30S ribosomal protein S6 -
  MKY79_RS22180 (MKY79_22180) ychF 4467620..4468720 (-) 1101 WP_095253904.1 redox-regulated ATPase YchF -
  MKY79_RS22185 (MKY79_22185) - 4468789..4468983 (-) 195 WP_035205683.1 DUF951 domain-containing protein -
  MKY79_RS22190 (MKY79_22190) - 4469047..4470075 (-) 1029 WP_094424417.1 hypothetical protein -
  MKY79_RS22195 (MKY79_22195) yyaC 4470161..4470793 (+) 633 WP_095253905.1 spore protease YyaC -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17478.03 Da        Isoelectric Point: 4.6010

>NTDB_id=996738 MKY79_RS22170 WP_063608863.1 4466463..4466945(-) (ssbA) [Shouchella clausii strain FSL M8-0189]
MLNRVVLVGRLTRDPELRFTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
SYDNNEGRRVFVTEVVAESVQFLEPRNSQNQSSGNPGFDQYGAGSQGSGNQTGGSRSNGYDNDPFSNDGSIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=996738 MKY79_RS22170 WP_063608863.1 4466463..4466945(-) (ssbA) [Shouchella clausii strain FSL M8-0189]
TTGTTAAACCGTGTTGTTCTTGTCGGACGCTTAACGCGTGACCCTGAATTGCGATTCACGCCAAACGGTGTAGCTGTAGC
CAATTTTACGCTTGCAGTCAACCGTCCGTTTTCAAACCAGCAAGGAGAACGAGAAGCTGACTTCATTAACTGTGTTGTCT
GGCGCAAACCGGCTGAGAACGTCGCCAATTTCCTTAAAAAAGGGAGCCTTGCAGGAGTCGACGGCCGTGTGCAAACGCGA
AGCTATGACAATAATGAAGGCAGGCGCGTTTTTGTAACGGAAGTCGTTGCTGAAAGCGTCCAATTTCTCGAACCTCGCAA
TAGTCAAAACCAATCCTCTGGGAATCCTGGTTTTGATCAGTACGGCGCTGGCAGCCAAGGTTCTGGCAACCAAACTGGTG
GCAGCCGTTCTAATGGATATGATAACGACCCGTTCTCGAATGACGGTTCGATTGATATTTCCGATGATGATCTTCCATTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A268RW45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.023

100

0.731
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

66.25

0.406

Multiple sequence alignment