Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKY04_RS22145 Genome accession   NZ_CP155468
Coordinates   4584124..4584687 (-) Length   187 a.a.
NCBI ID   WP_126293825.1    Uniprot ID   A0A431UU35
Organism   Lysinibacillus telephonicus strain FSL R5-0572     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4579124..4589687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY04_RS22120 (MKY04_22120) - 4579371..4581344 (-) 1974 WP_126293828.1 DHH family phosphoesterase -
  MKY04_RS22125 (MKY04_22125) - 4581357..4582298 (-) 942 WP_126293827.1 DUF2232 domain-containing protein -
  MKY04_RS22130 (MKY04_22130) - 4582648..4582953 (-) 306 WP_346235142.1 hypothetical protein -
  MKY04_RS22135 (MKY04_22135) - 4582899..4583300 (-) 402 WP_346235143.1 hypothetical protein -
  MKY04_RS22140 (MKY04_22140) rpsR 4583686..4583922 (-) 237 WP_016838914.1 30S ribosomal protein S18 -
  MKY04_RS22145 (MKY04_22145) ssbA 4584124..4584687 (-) 564 WP_126293825.1 single-stranded DNA-binding protein Machinery gene
  MKY04_RS22150 (MKY04_22150) rpsF 4584727..4585014 (-) 288 WP_126293824.1 30S ribosomal protein S6 -
  MKY04_RS22155 (MKY04_22155) - 4585229..4585789 (+) 561 WP_126293823.1 DUF3267 domain-containing protein -
  MKY04_RS22160 (MKY04_22160) ychF 4585923..4587023 (-) 1101 WP_126293822.1 redox-regulated ATPase YchF -
  MKY04_RS22165 (MKY04_22165) - 4587131..4587331 (-) 201 WP_126293821.1 DUF951 domain-containing protein -
  MKY04_RS22170 (MKY04_22170) - 4587331..4588242 (-) 912 WP_126293820.1 mechanosensitive ion channel family protein -
  MKY04_RS22175 (MKY04_22175) yyaC 4588359..4588988 (+) 630 WP_126293819.1 spore protease YyaC -
  MKY04_RS22180 (MKY04_22180) - 4588905..4589612 (-) 708 WP_126293818.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20536.47 Da        Isoelectric Point: 4.7687

>NTDB_id=996696 MKY04_RS22145 WP_126293825.1 4584124..4584687(-) (ssbA) [Lysinibacillus telephonicus strain FSL R5-0572]
MINHVVLVGRLTKDPELRYTPSGVPMTRFTVAVNRAFSNQSGEREADFIGCIAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNAGGGANMPNQQYGGQSYGGNQPTYNTSQPNQQFGNQGQDPFASYPQSQPSGNQ
QNYTRVDEDPFASSKGPIEVSEDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=996696 MKY04_RS22145 WP_126293825.1 4584124..4584687(-) (ssbA) [Lysinibacillus telephonicus strain FSL R5-0572]
GTGATAAACCATGTCGTATTAGTTGGAAGACTTACGAAGGATCCAGAACTTCGTTATACACCAAGTGGAGTTCCGATGAC
TCGCTTTACAGTCGCTGTAAATAGAGCATTTTCGAACCAATCTGGTGAGCGCGAAGCTGATTTTATCGGATGTATCGCTT
GGAGAAAACAAGCCGAAAACTTAGCAAACTTTATGAGAAAAGGAAGTTTGATTGGTGTTGAAGGCCGCATTCAAACAGGC
AGCTACGAGGGTCAGGATGGAAAACGTGTTTACACAACAGACGTTGTAGCGGATTCTGTACAATTTTTAGAGCCGCGAAA
CGCTGGTGGCGGAGCAAATATGCCAAATCAACAGTATGGAGGGCAATCATATGGGGGCAACCAACCTACATATAACACAA
GCCAACCGAACCAACAATTTGGTAACCAGGGTCAAGATCCTTTTGCTTCATATCCACAAAGTCAACCTTCTGGAAATCAG
CAAAATTATACACGTGTAGATGAGGATCCTTTTGCATCAAGCAAAGGTCCAATCGAAGTTTCTGAGGACGACTTACCGTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A431UU35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.562

100

0.529
  ssb Latilactobacillus sakei subsp. sakei 23K

47.09

100

0.476

Multiple sequence alignment