Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   MKY04_RS03105 Genome accession   NZ_CP155468
Coordinates   638851..639567 (-) Length   238 a.a.
NCBI ID   WP_126293143.1    Uniprot ID   A0A3S0KL09
Organism   Lysinibacillus telephonicus strain FSL R5-0572     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 633851..644567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY04_RS03090 (MKY04_03090) - 635246..636112 (+) 867 WP_126293133.1 SDR family oxidoreductase -
  MKY04_RS03095 (MKY04_03095) - 636683..637198 (+) 516 WP_346235286.1 hypothetical protein -
  MKY04_RS03100 (MKY04_03100) - 637460..638854 (-) 1395 WP_346235287.1 HAMP domain-containing sensor histidine kinase -
  MKY04_RS03105 (MKY04_03105) scnR 638851..639567 (-) 717 WP_126293143.1 response regulator transcription factor Regulator
  MKY04_RS03110 (MKY04_03110) - 639724..640635 (+) 912 WP_126293145.1 ABC transporter ATP-binding protein -
  MKY04_RS03115 (MKY04_03115) - 640635..641390 (+) 756 WP_346235288.1 ABC transporter permease -
  MKY04_RS03120 (MKY04_03120) - 641403..642137 (+) 735 WP_346235289.1 ABC transporter permease -
  MKY04_RS03125 (MKY04_03125) - 642499..642915 (+) 417 WP_346235290.1 DUF3231 family protein -
  MKY04_RS03130 (MKY04_03130) - 642924..643505 (+) 582 WP_346235291.1 DUF3231 family protein -
  MKY04_RS03135 (MKY04_03135) - 643538..643996 (+) 459 WP_346235292.1 hypothetical protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27322.54 Da        Isoelectric Point: 4.8290

>NTDB_id=996659 MKY04_RS03105 WP_126293143.1 638851..639567(-) (scnR) [Lysinibacillus telephonicus strain FSL R5-0572]
MDDIKNKKLLIVDDEKEIRNILDEFLRKEGFNRIFHAATCEEALQVCQTVKPDIAILDVMLPDGDGFSLLTSIRQISNFP
VLFLSARGEDEDRLLGLGLGADDYIVKPFLPRELFLRLTAVLRRVYSQPMRDEPPIFNLGNRIIDLGSGTVQYKENEFSL
TAKEFALLFKLYENRNRIVTSDALCQAVWGDDYYGFENTLMVHIRRIREKIEADPSNPEFLLTIRGLGYKLMVKEGLT

Nucleotide


Download         Length: 717 bp        

>NTDB_id=996659 MKY04_RS03105 WP_126293143.1 638851..639567(-) (scnR) [Lysinibacillus telephonicus strain FSL R5-0572]
ATGGATGATATAAAAAATAAGAAACTACTAATTGTAGACGATGAAAAAGAAATCAGAAACATATTAGATGAATTTTTAAG
AAAAGAAGGATTTAATCGTATTTTCCACGCTGCTACTTGTGAAGAAGCATTACAGGTTTGTCAGACGGTAAAACCAGATA
TTGCAATTTTAGATGTTATGCTGCCTGACGGAGATGGCTTTTCCCTTTTGACTTCTATACGACAAATATCAAATTTTCCG
GTTCTTTTTTTATCTGCAAGAGGAGAAGATGAAGATCGTTTATTAGGACTTGGACTCGGTGCTGATGATTATATAGTAAA
ACCTTTCTTACCCCGTGAGCTATTCCTTCGACTAACAGCAGTTTTGCGAAGGGTATATTCACAGCCTATGAGGGATGAGC
CACCTATCTTTAATTTGGGTAACCGCATCATCGATCTTGGAAGCGGCACTGTTCAGTACAAAGAAAATGAATTTTCTTTA
ACAGCAAAGGAATTTGCATTACTTTTCAAACTTTATGAAAACCGGAACCGTATCGTAACAAGTGATGCACTTTGCCAAGC
AGTATGGGGAGATGATTACTACGGTTTTGAAAACACTTTGATGGTCCATATACGCCGAATCCGAGAAAAGATTGAGGCGG
ATCCTTCCAATCCGGAATTTTTGCTTACCATTCGGGGGTTAGGATACAAGCTAATGGTAAAGGAAGGGTTAACATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(157-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S0KL09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.784

97.059

0.483
  micA Streptococcus pneumoniae Cp1015

42.672

97.479

0.416
  vicR Streptococcus mutans UA159

40.948

97.479

0.399

Multiple sequence alignment