Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NSQ14_RS11290 Genome accession   NZ_CP155467
Coordinates   2365347..2365646 (+) Length   99 a.a.
NCBI ID   WP_041903955.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0862     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2360347..2370646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ14_RS11260 (NSQ14_11260) - 2360353..2361156 (+) 804 WP_034770996.1 YqhG family protein -
  NSQ14_RS11265 (NSQ14_11265) - 2361695..2361865 (-) 171 WP_034770998.1 DUF2759 domain-containing protein -
  NSQ14_RS11270 (NSQ14_11270) - 2361936..2362178 (-) 243 WP_034771001.1 DUF2626 domain-containing protein -
  NSQ14_RS11275 (NSQ14_11275) - 2362317..2363018 (-) 702 WP_034771004.1 metalloregulator ArsR/SmtB family transcription factor -
  NSQ14_RS11280 (NSQ14_11280) comGA 2363229..2364314 (+) 1086 WP_034771006.1 competence type IV pilus ATPase ComGA Machinery gene
  NSQ14_RS11285 (NSQ14_11285) comGB 2364289..2365320 (+) 1032 WP_034771008.1 competence type IV pilus assembly protein ComGB -
  NSQ14_RS11290 (NSQ14_11290) comGC 2365347..2365646 (+) 300 WP_041903955.1 competence type IV pilus major pilin ComGC Machinery gene
  NSQ14_RS11295 (NSQ14_11295) comGD 2365621..2366124 (+) 504 WP_346216340.1 competence type IV pilus minor pilin ComGD -
  NSQ14_RS11300 (NSQ14_11300) - 2366099..2366455 (+) 357 WP_269919086.1 hypothetical protein -
  NSQ14_RS11305 (NSQ14_11305) comGF 2366427..2366891 (+) 465 WP_269919087.1 competence type IV pilus minor pilin ComGF -
  NSQ14_RS11310 (NSQ14_11310) comGG 2366839..2367312 (+) 474 WP_269919088.1 competence type IV pilus minor pilin ComGG -
  NSQ14_RS11315 (NSQ14_11315) - 2367410..2367595 (+) 186 WP_034771024.1 YqzE family protein -
  NSQ14_RS11320 (NSQ14_11320) - 2367626..2368750 (-) 1125 WP_346216341.1 hypothetical protein -
  NSQ14_RS11325 (NSQ14_11325) - 2368917..2370104 (-) 1188 WP_346216342.1 M14 family metallopeptidase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11010.98 Da        Isoelectric Point: 6.4513

>NTDB_id=996632 NSQ14_RS11290 WP_041903955.1 2365347..2365646(+) (comGC) [Caldifermentibacillus hisashii strain FSL W8-0862]
MLKKESAFTLIEMMIVLFVITILLLITIPNVTKHQTSISNKGCEGLENMVQAEIQAYQIDHNKLPASIDDLKNGYLKEDP
VCPDGRKIVISNGDAVIKK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=996632 NSQ14_RS11290 WP_041903955.1 2365347..2365646(+) (comGC) [Caldifermentibacillus hisashii strain FSL W8-0862]
ATGTTGAAAAAAGAATCTGCATTTACGTTAATCGAGATGATGATCGTACTGTTCGTCATCACTATTTTACTGCTTATAAC
CATTCCAAACGTGACAAAACACCAGACAAGTATCAGCAATAAAGGCTGTGAAGGATTAGAAAATATGGTTCAGGCAGAAA
TCCAAGCCTATCAAATTGATCATAATAAATTACCTGCTTCTATTGATGACTTGAAAAACGGATATTTGAAAGAAGACCCG
GTATGTCCGGATGGAAGGAAGATTGTTATCTCTAATGGTGATGCAGTTATCAAAAAGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

54.737

95.96

0.525
  comGC Staphylococcus aureus MW2

46.939

98.99

0.465
  comGC Staphylococcus aureus N315

46.939

98.99

0.465

Multiple sequence alignment