Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V8Y39_RS01630 Genome accession   NZ_CP155444
Coordinates   337877..338389 (-) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium strain NPLps07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 332877..343389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8Y39_RS01610 (V8Y39_01610) dnaB 333399..334766 (-) 1368 WP_002288373.1 replicative DNA helicase -
  V8Y39_RS01615 (V8Y39_01615) rplI 335041..335493 (-) 453 WP_002293132.1 50S ribosomal protein L9 -
  V8Y39_RS01620 (V8Y39_01620) - 335499..337472 (-) 1974 WP_002319563.1 DHH family phosphoesterase -
  V8Y39_RS01625 (V8Y39_01625) rpsR 337615..337851 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  V8Y39_RS01630 (V8Y39_01630) ssb 337877..338389 (-) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  V8Y39_RS01635 (V8Y39_01635) rpsF 338440..338739 (-) 300 WP_002293129.1 30S ribosomal protein S6 -
  V8Y39_RS01640 (V8Y39_01640) gyrA 338975..341446 (-) 2472 WP_002293127.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=996341 V8Y39_RS01630 WP_002288368.1 337877..338389(-) (ssb) [Enterococcus faecium strain NPLps07]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=996341 V8Y39_RS01630 WP_002288368.1 337877..338389(-) (ssb) [Enterococcus faecium strain NPLps07]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTAACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGATCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388

Multiple sequence alignment