Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QMM73_RS02515 Genome accession   NZ_AP027135
Coordinates   533750..534319 (+) Length   189 a.a.
NCBI ID   WP_045176736.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP089     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 528750..539319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM73_RS02490 (JP089_04510) cysE 529963..530610 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  QMM73_RS02495 (JP089_04520) cysS 530594..531994 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  QMM73_RS02500 (JP089_04530) - 531987..532391 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QMM73_RS02505 (JP089_04540) rlmB 532399..533145 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QMM73_RS02510 (JP089_04550) - 533145..533669 (+) 525 WP_000664738.1 NYN domain-containing protein -
  QMM73_RS02515 (JP089_04560) sigH 533750..534319 (+) 570 WP_045176736.1 RNA polymerase sigma factor Regulator
  QMM73_RS02520 rpmG 534434..534577 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  QMM73_RS02525 (JP089_04570) secE 534633..534815 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QMM73_RS02530 (JP089_04580) nusG 534828..535376 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QMM73_RS02535 (JP089_04590) rplK 535557..535979 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  QMM73_RS02540 (JP089_04600) rplA 536187..536879 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  QMM73_RS02545 (JP089_04610) rplJ 537151..537651 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  QMM73_RS02550 (JP089_04620) rplL 537694..538062 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QMM73_RS02555 (JP089_04630) - 538237..538845 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23113.96 Da        Isoelectric Point: 9.5790

>NTDB_id=99631 QMM73_RS02515 WP_045176736.1 533750..534319(+) (sigH) [Staphylococcus aureus strain JP089]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQYKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=99631 QMM73_RS02515 WP_045176736.1 533750..534319(+) (sigH) [Staphylococcus aureus strain JP089]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTATAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCAAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment