Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AAFX13_RS23695 | Genome accession | NZ_CP155084 |
| Coordinates | 3253716..3254309 (-) | Length | 197 a.a. |
| NCBI ID | WP_029863582.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain TBV028 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3248716..3259309
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFX13_RS23675 (AAFX13_23680) | aroB | 3249592..3250692 (-) | 1101 | WP_031815697.1 | 3-dehydroquinate synthase | - |
| AAFX13_RS23680 (AAFX13_23685) | aroK | 3250724..3251242 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| AAFX13_RS23685 (AAFX13_23690) | pilQ | 3251431..3253179 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| AAFX13_RS23690 (AAFX13_23695) | pilP | 3253211..3253726 (-) | 516 | WP_025554074.1 | pilus assembly protein PilP | Machinery gene |
| AAFX13_RS23695 (AAFX13_23700) | pilO | 3253716..3254309 (-) | 594 | WP_029863582.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AAFX13_RS23700 (AAFX13_23705) | pilN | 3254302..3254880 (-) | 579 | WP_005480484.1 | PilN domain-containing protein | Machinery gene |
| AAFX13_RS23705 (AAFX13_23710) | pilM | 3254864..3255880 (-) | 1017 | WP_031815696.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| AAFX13_RS23710 (AAFX13_23715) | - | 3256023..3258593 (+) | 2571 | WP_031815695.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23119.69 Da Isoelectric Point: 4.8225
>NTDB_id=996222 AAFX13_RS23695 WP_029863582.1 3253716..3254309(-) (pilO) [Vibrio parahaemolyticus strain TBV028]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKVNKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKVNKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=996222 AAFX13_RS23695 WP_029863582.1 3253716..3254309(-) (pilO) [Vibrio parahaemolyticus strain TBV028]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGTCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACATTGCCACGAATCATC
ACCTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGTCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACATTGCCACGAATCATC
ACCTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
93.684 |
96.447 |
0.904 |
| pilO | Vibrio cholerae strain A1552 |
72.081 |
100 |
0.721 |