Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAHT64_RS18405 Genome accession   NZ_CP155054
Coordinates   3551137..3552285 (-) Length   382 a.a.
NCBI ID   WP_003246686.1    Uniprot ID   A0AAE2V9H5
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3546137..3557285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS18375 (AAHT64_18375) yclO 3546854..3547801 (-) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  AAHT64_RS18380 (AAHT64_18380) ceuB 3547794..3548744 (-) 951 WP_003234491.1 petrobactin ABC transporter permease YclN Machinery gene
  AAHT64_RS18385 (AAHT64_18385) thrD 3549129..3550493 (+) 1365 WP_003234493.1 aspartate kinase -
  AAHT64_RS18390 (AAHT64_18390) yczN 3550647..3550760 (+) 114 WP_003234495.1 YjcZ family sporulation protein -
  AAHT64_RS18395 (AAHT64_18395) yczM 3550842..3550931 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  AAHT64_RS18400 (AAHT64_18400) phrC 3551031..3551153 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  AAHT64_RS18405 (AAHT64_18405) rapC 3551137..3552285 (-) 1149 WP_003246686.1 response regulator aspartate phosphatase RapC Regulator
  AAHT64_RS18410 (AAHT64_18410) yclK 3552448..3553869 (-) 1422 WP_009969263.1 two-component system sensor histidine kinase YclK -
  AAHT64_RS18415 (AAHT64_18415) yclJ 3553856..3554539 (-) 684 WP_003246532.1 two-component system response regulator YclJ -
  AAHT64_RS18420 (AAHT64_18420) yclI 3554752..3556212 (+) 1461 WP_003234506.1 ABC transporter permease -
  AAHT64_RS18425 (AAHT64_18425) yclH 3556228..3556908 (+) 681 WP_003234507.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45634.68 Da        Isoelectric Point: 4.9618

>NTDB_id=995885 AAHT64_RS18405 WP_003246686.1 3551137..3552285(-) (rapC) [Bacillus subtilis subsp. subtilis strain R38]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYLDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=995885 AAHT64_RS18405 WP_003246686.1 3551137..3552285(-) (rapC) [Bacillus subtilis subsp. subtilis strain R38]
ATGAAGAGTGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTCTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAGTGCCATTT
CGTCTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAACATGGCCC
AAGCAGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTCGGGTTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCTGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  rapF Bacillus subtilis subsp. subtilis str. 168

57.368

99.476

0.571

Multiple sequence alignment