Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AAVB74_RS10490 Genome accession   NZ_CP154920
Coordinates   1953321..1953656 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain FUA2232     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1948321..1958656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB74_RS10440 (AAVB74_10440) comGC 1948340..1948636 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  AAVB74_RS10445 (AAVB74_10445) comGD 1948626..1949057 (+) 432 WP_024573390.1 comG operon protein ComGD Machinery gene
  AAVB74_RS10450 (AAVB74_10450) comGE 1949041..1949388 (+) 348 WP_345806076.1 ComG operon protein 5 Machinery gene
  AAVB74_RS10455 (AAVB74_10455) comGF 1949414..1949797 (+) 384 WP_345806077.1 ComG operon protein ComGF Machinery gene
  AAVB74_RS10460 (AAVB74_10460) comGG 1949798..1950172 (+) 375 WP_345806078.1 ComG operon protein ComGG Machinery gene
  AAVB74_RS10465 (AAVB74_10465) spoIIT 1950243..1950422 (+) 180 WP_003230176.1 YqzE family protein -
  AAVB74_RS10470 (AAVB74_10470) yqzG 1950464..1950790 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  AAVB74_RS10475 (AAVB74_10475) tapA 1951062..1951823 (+) 762 WP_345806079.1 amyloid fiber anchoring/assembly protein TapA -
  AAVB74_RS10480 (AAVB74_10480) sipW 1951807..1952379 (+) 573 WP_072692741.1 signal peptidase I -
  AAVB74_RS10485 (AAVB74_10485) tasA 1952443..1953228 (+) 786 WP_345806080.1 biofilm matrix protein TasA -
  AAVB74_RS10490 (AAVB74_10490) sinR 1953321..1953656 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  AAVB74_RS10495 (AAVB74_10495) sinI 1953690..1953863 (-) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  AAVB74_RS10500 (AAVB74_10500) yqhG 1954046..1954840 (-) 795 WP_003230200.1 YqhG family protein -
  AAVB74_RS10505 (AAVB74_10505) yqhH 1954861..1956534 (-) 1674 WP_003230203.1 SNF2-related protein -
  AAVB74_RS10510 (AAVB74_10510) gcvT 1956976..1958064 (+) 1089 WP_345806081.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=995461 AAVB74_RS10490 WP_003226345.1 1953321..1953656(-) (sinR) [Bacillus subtilis strain FUA2232]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=995461 AAVB74_RS10490 WP_003226345.1 1953321..1953656(-) (sinR) [Bacillus subtilis strain FUA2232]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCGGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment