Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AAYR29_RS23155 Genome accession   NZ_CP154918
Coordinates   4357069..4357713 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2231     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 4352069..4362713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS23130 (AAYR29_23130) - 4352418..4352786 (-) 369 WP_017695529.1 hypothetical protein -
  AAYR29_RS23135 (AAYR29_23135) degQ 4353249..4353389 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AAYR29_RS23140 (AAYR29_23140) - 4353574..4354437 (+) 864 WP_345805928.1 polyprenyl synthetase family protein -
  AAYR29_RS23145 (AAYR29_23145) comX 4354439..4354660 (+) 222 WP_014480704.1 competence pheromone ComX -
  AAYR29_RS23150 (AAYR29_23150) comP 4354676..4356988 (+) 2313 WP_213418792.1 histidine kinase Regulator
  AAYR29_RS23155 (AAYR29_23155) comA 4357069..4357713 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  AAYR29_RS23160 (AAYR29_23160) yuxO 4357732..4358112 (+) 381 WP_014477831.1 hotdog fold thioesterase -
  AAYR29_RS23165 (AAYR29_23165) mnhG 4358151..4358525 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  AAYR29_RS23170 (AAYR29_23170) mrpF 4358509..4358793 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AAYR29_RS23175 (AAYR29_23175) mrpE 4358793..4359269 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  AAYR29_RS23180 (AAYR29_23180) mrpD 4359275..4360756 (-) 1482 WP_041850587.1 Na+/H+ antiporter subunit D -
  AAYR29_RS23185 (AAYR29_23185) mrpC 4360749..4361090 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  AAYR29_RS23190 (AAYR29_23190) mrpB 4361090..4361521 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=995419 AAYR29_RS23155 WP_003220716.1 4357069..4357713(+) (comA) [Bacillus subtilis strain FUA2231]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=995419 AAYR29_RS23155 WP_003220716.1 4357069..4357713(+) (comA) [Bacillus subtilis strain FUA2231]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACGCCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment