Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EJM92_RS20975 Genome accession   NZ_LR130531
Coordinates   4444698..4445342 (-) Length   214 a.a.
NCBI ID   WP_003085214.1    Uniprot ID   A0A0H2ZLY6
Organism   Pseudomonas aeruginosa isolate paerg004     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4439698..4450342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJM92_RS20945 (BANRA_04065) - 4440142..4441218 (+) 1077 WP_023112723.1 pyocin knob domain-containing protein -
  EJM92_RS20950 (BANRA_04066) - 4441218..4441520 (+) 303 WP_014602440.1 hypothetical protein -
  EJM92_RS20955 (BANRA_04067) - 4441517..4441741 (+) 225 WP_003459442.1 hypothetical protein -
  EJM92_RS20960 (BANRA_04068) - 4442147..4442752 (+) 606 WP_003101640.1 aminodeoxychorismate/anthranilate synthase component II -
  EJM92_RS20965 (BANRA_04069) trpD 4442754..4443803 (+) 1050 WP_003085203.1 anthranilate phosphoribosyltransferase -
  EJM92_RS20970 (BANRA_04070) trpC 4443800..4444636 (+) 837 WP_014602442.1 indole-3-glycerol phosphate synthase TrpC -
  EJM92_RS20975 (BANRA_04071) crp 4444698..4445342 (-) 645 WP_003085214.1 cAMP-activated global transcriptional regulator CRP Regulator
  EJM92_RS20980 (BANRA_04072) - 4445614..4446036 (+) 423 WP_003085219.1 OsmC family protein -
  EJM92_RS20985 (BANRA_04073) speD 4446356..4447150 (+) 795 WP_003101641.1 adenosylmethionine decarboxylase -
  EJM92_RS20990 (BANRA_04074) coq7 4447205..4447852 (-) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  EJM92_RS20995 (BANRA_04075) - 4447952..4448290 (-) 339 WP_003085225.1 histidine triad nucleotide-binding protein -
  EJM92_RS21000 (BANRA_04076) - 4448369..4449850 (+) 1482 WP_003117981.1 AAA family ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24225.01 Da        Isoelectric Point: 8.0525

>NTDB_id=995385 EJM92_RS20975 WP_003085214.1 4444698..4445342(-) (crp) [Pseudomonas aeruginosa isolate paerg004]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=995385 EJM92_RS20975 WP_003085214.1 4444698..4445342(-) (crp) [Pseudomonas aeruginosa isolate paerg004]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGCGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505

Multiple sequence alignment