Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AAYR29_RS11525 Genome accession   NZ_CP154918
Coordinates   2128491..2129069 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain FUA2231     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2123491..2134069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS11490 (AAYR29_11490) lepB 2123496..2124002 (-) 507 WP_003233128.1 signal peptidase I -
  AAYR29_RS11495 (AAYR29_11495) yhjE 2124004..2124627 (-) 624 WP_010886465.1 VTT domain-containing protein -
  AAYR29_RS11500 (AAYR29_11500) - 2124779..2125141 (+) 363 WP_024571727.1 hypothetical protein -
  AAYR29_RS11505 (AAYR29_11505) yhjC 2125349..2125549 (+) 201 WP_024571728.1 DUF3311 domain-containing protein -
  AAYR29_RS11510 (AAYR29_11510) yhjB 2125546..2127015 (+) 1470 WP_345806471.1 sodium:solute symporter -
  AAYR29_RS11515 (AAYR29_11515) yhjA 2127059..2127328 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  AAYR29_RS11520 (AAYR29_11520) yhxD 2127545..2128444 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  AAYR29_RS11525 (AAYR29_11525) comK 2128491..2129069 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  AAYR29_RS11530 (AAYR29_11530) yhzC 2129362..2129595 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  AAYR29_RS11535 (AAYR29_11535) yhxC 2129623..2130480 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  AAYR29_RS11540 (AAYR29_11540) yhfW 2130592..2132121 (+) 1530 WP_032730444.1 FAD-dependent oxidoreductase -
  AAYR29_RS11545 (AAYR29_11545) hemAT 2132260..2133558 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=995385 AAYR29_RS11525 WP_003245329.1 2128491..2129069(-) (comK) [Bacillus subtilis strain FUA2231]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=995385 AAYR29_RS11525 WP_003245329.1 2128491..2129069(-) (comK) [Bacillus subtilis strain FUA2231]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment