Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AAVC46_RS10055 Genome accession   NZ_CP154913
Coordinates   1901485..1902126 (-) Length   213 a.a.
NCBI ID   WP_058013793.1    Uniprot ID   A0A2G8IV23
Organism   Bacillus pumilus strain FUA2119     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1896485..1907126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS10020 (AAVC46_10020) - 1897597..1898028 (+) 432 WP_034317176.1 Na(+)/H(+) antiporter subunit B -
  AAVC46_RS10025 (AAVC46_10025) - 1898028..1898369 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  AAVC46_RS10030 (AAVC46_10030) - 1898362..1899840 (+) 1479 WP_034659818.1 Na+/H+ antiporter subunit D -
  AAVC46_RS10035 (AAVC46_10035) - 1899847..1900326 (+) 480 WP_034659819.1 Na+/H+ antiporter subunit E -
  AAVC46_RS10040 (AAVC46_10040) - 1900326..1900607 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  AAVC46_RS10045 (AAVC46_10045) mnhG 1900591..1900965 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  AAVC46_RS10050 (AAVC46_10050) - 1901072..1901461 (-) 390 WP_034659822.1 hotdog fold thioesterase -
  AAVC46_RS10055 (AAVC46_10055) comA 1901485..1902126 (-) 642 WP_058013793.1 response regulator transcription factor Regulator
  AAVC46_RS10060 (AAVC46_10060) comP 1902207..1904519 (-) 2313 WP_340973638.1 ATP-binding protein Regulator
  AAVC46_RS10065 (AAVC46_10065) comX 1904573..1904743 (-) 171 WP_080869541.1 competence pheromone ComX -
  AAVC46_RS10070 (AAVC46_10070) - 1904740..1905654 (-) 915 WP_340973639.1 polyprenyl synthetase family protein -
  AAVC46_RS10075 (AAVC46_10075) degQ 1905806..1905946 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  AAVC46_RS10080 (AAVC46_10080) - 1906452..1906805 (+) 354 WP_340973640.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24154.55 Da        Isoelectric Point: 4.5688

>NTDB_id=995318 AAVC46_RS10055 WP_058013793.1 1901485..1902126(-) (comA) [Bacillus pumilus strain FUA2119]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=995318 AAVC46_RS10055 WP_058013793.1 1901485..1902126(-) (comA) [Bacillus pumilus strain FUA2119]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAGCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACCGATCATGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTCGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IV23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment