Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AAYR27_RS06745 Genome accession   NZ_CP154912
Coordinates   1348215..1348904 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain FUA2118     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343215..1353904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR27_RS06725 (AAYR27_06725) - 1343907..1344974 (+) 1068 WP_024423627.1 MraY family glycosyltransferase -
  AAYR27_RS06730 (AAYR27_06730) - 1345010..1346101 (-) 1092 WP_034281103.1 LCP family protein -
  AAYR27_RS06735 (AAYR27_06735) - 1346086..1346754 (-) 669 WP_012011434.1 YigZ family protein -
  AAYR27_RS06740 (AAYR27_06740) degS 1346975..1348150 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AAYR27_RS06745 (AAYR27_06745) degU 1348215..1348904 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AAYR27_RS06750 (AAYR27_06750) - 1349120..1349962 (+) 843 WP_024423625.1 DegV family protein -
  AAYR27_RS06755 (AAYR27_06755) comFA 1350080..1351480 (+) 1401 WP_309300290.1 DEAD/DEAH box helicase Machinery gene
  AAYR27_RS06760 (AAYR27_06760) - 1351529..1351822 (+) 294 WP_024423623.1 competence protein ComFB -
  AAYR27_RS06765 (AAYR27_06765) comFC 1351849..1352505 (+) 657 WP_260983460.1 ComF family protein Machinery gene
  AAYR27_RS06770 (AAYR27_06770) - 1352562..1352981 (+) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  AAYR27_RS06775 (AAYR27_06775) flgM 1353061..1353324 (+) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAYR27_RS06780 (AAYR27_06780) - 1353343..1353825 (+) 483 WP_024423619.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=995233 AAYR27_RS06745 WP_008348273.1 1348215..1348904(+) (degU) [Bacillus safensis strain FUA2118]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=995233 AAYR27_RS06745 WP_008348273.1 1348215..1348904(+) (degU) [Bacillus safensis strain FUA2118]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACACCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment