Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AAVD42_RS11655 Genome accession   NZ_CP154908
Coordinates   2042564..2043109 (-) Length   181 a.a.
NCBI ID   WP_044139041.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2037564..2048109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS11630 (AAVD42_11630) - 2037827..2038435 (-) 609 WP_044139045.1 alpha/beta hydrolase -
  AAVD42_RS11635 (AAVD42_11635) - 2038432..2039403 (-) 972 WP_345806774.1 ring-cleaving dioxygenase -
  AAVD42_RS11640 (AAVD42_11640) - 2039595..2041112 (-) 1518 WP_345806775.1 ABC transporter permease/substrate-binding protein -
  AAVD42_RS11645 (AAVD42_11645) - 2041105..2042070 (-) 966 WP_345806776.1 ABC transporter ATP-binding protein -
  AAVD42_RS11650 (AAVD42_11650) rpsR 2042280..2042519 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  AAVD42_RS11655 (AAVD42_11655) ssbA 2042564..2043109 (-) 546 WP_044139041.1 single-stranded DNA-binding protein SsbA Machinery gene
  AAVD42_RS11660 (AAVD42_11660) rpsF 2043146..2043433 (-) 288 WP_044139040.1 30S ribosomal protein S6 -
  AAVD42_RS11665 (AAVD42_11665) ychF 2043542..2044642 (-) 1101 WP_345806777.1 redox-regulated ATPase YchF -
  AAVD42_RS11670 (AAVD42_11670) - 2044859..2045065 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  AAVD42_RS11675 (AAVD42_11675) - 2045351..2046670 (+) 1320 WP_345806778.1 hydrolase -
  AAVD42_RS11680 (AAVD42_11680) - 2046686..2047096 (+) 411 WP_345806779.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19733.28 Da        Isoelectric Point: 4.6109

>NTDB_id=995127 AAVD42_RS11655 WP_044139041.1 2042564..2043109(-) (ssbA) [Bacillus pumilus strain FUA2116]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=995127 AAVD42_RS11655 WP_044139041.1 2042564..2043109(-) (ssbA) [Bacillus pumilus strain FUA2116]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGTAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.083

100

0.851
  ssb Latilactobacillus sakei subsp. sakei 23K

56.15

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment