Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AAVD42_RS04335 Genome accession   NZ_CP154908
Coordinates   632630..632923 (-) Length   97 a.a.
NCBI ID   WP_003217322.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 627630..637923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS04285 (AAVD42_04285) sinR 627793..628128 (+) 336 WP_106065581.1 helix-turn-helix domain-containing protein Regulator
  AAVD42_RS04290 (AAVD42_04290) - 628196..628996 (-) 801 WP_345807837.1 TasA family protein -
  AAVD42_RS04295 (AAVD42_04295) - 629054..629626 (-) 573 WP_003217306.1 signal peptidase I -
  AAVD42_RS04300 (AAVD42_04300) tapA 629678..630205 (-) 528 WP_345807838.1 amyloid fiber anchoring/assembly protein TapA -
  AAVD42_RS04305 (AAVD42_04305) - 630505..630783 (+) 279 WP_065098439.1 DUF3889 domain-containing protein -
  AAVD42_RS04310 (AAVD42_04310) - 630817..631011 (-) 195 WP_044140973.1 YqzE family protein -
  AAVD42_RS04315 (AAVD42_04315) comGG 631071..631454 (-) 384 WP_345807839.1 competence type IV pilus minor pilin ComGG -
  AAVD42_RS04320 (AAVD42_04320) comGF 631451..631855 (-) 405 WP_223250623.1 competence type IV pilus minor pilin ComGF -
  AAVD42_RS04325 (AAVD42_04325) comGE 631890..632207 (-) 318 WP_345807840.1 competence type IV pilus minor pilin ComGE -
  AAVD42_RS04330 (AAVD42_04330) comGD 632191..632637 (-) 447 WP_345807841.1 competence type IV pilus minor pilin ComGD -
  AAVD42_RS04335 (AAVD42_04335) comGC 632630..632923 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene
  AAVD42_RS04340 (AAVD42_04340) comGB 632940..634019 (-) 1080 WP_345807842.1 competence type IV pilus assembly protein ComGB -
  AAVD42_RS04345 (AAVD42_04345) comGA 633961..635029 (-) 1069 Protein_699 competence type IV pilus ATPase ComGA -
  AAVD42_RS04350 (AAVD42_04350) - 635208..636080 (-) 873 WP_345807843.1 STAS domain-containing protein -
  AAVD42_RS04360 (AAVD42_04360) - 636304..636684 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AAVD42_RS04365 (AAVD42_04365) - 636898..637140 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  AAVD42_RS04370 (AAVD42_04370) - 637186..637824 (-) 639 WP_003217463.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10739.69 Da        Isoelectric Point: 7.3837

>NTDB_id=995103 AAVD42_RS04335 WP_003217322.1 632630..632923(-) (comGC) [Bacillus pumilus strain FUA2116]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=995103 AAVD42_RS04335 WP_003217322.1 632630..632923(-) (comGC) [Bacillus pumilus strain FUA2116]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCGATTCTTTTACTTATTACCATTCC
GAATATTACTCGTCACCACCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACTCAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCTTCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment