Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | AAVD42_RS04285 | Genome accession | NZ_CP154908 |
| Coordinates | 627793..628128 (+) | Length | 111 a.a. |
| NCBI ID | WP_106065581.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain FUA2116 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 622793..633128
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAVD42_RS04265 (AAVD42_04265) | gcvT | 623270..624367 (-) | 1098 | WP_345807835.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AAVD42_RS04270 (AAVD42_04270) | - | 624930..626600 (+) | 1671 | WP_345807836.1 | SNF2-related protein | - |
| AAVD42_RS04275 (AAVD42_04275) | - | 626615..627412 (+) | 798 | WP_268484395.1 | YqhG family protein | - |
| AAVD42_RS04280 (AAVD42_04280) | - | 627595..627759 (+) | 165 | WP_003217357.1 | anti-repressor SinI family protein | - |
| AAVD42_RS04285 (AAVD42_04285) | sinR | 627793..628128 (+) | 336 | WP_106065581.1 | helix-turn-helix domain-containing protein | Regulator |
| AAVD42_RS04290 (AAVD42_04290) | - | 628196..628996 (-) | 801 | WP_345807837.1 | TasA family protein | - |
| AAVD42_RS04295 (AAVD42_04295) | - | 629054..629626 (-) | 573 | WP_003217306.1 | signal peptidase I | - |
| AAVD42_RS04300 (AAVD42_04300) | tapA | 629678..630205 (-) | 528 | WP_345807838.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AAVD42_RS04305 (AAVD42_04305) | - | 630505..630783 (+) | 279 | WP_065098439.1 | DUF3889 domain-containing protein | - |
| AAVD42_RS04310 (AAVD42_04310) | - | 630817..631011 (-) | 195 | WP_044140973.1 | YqzE family protein | - |
| AAVD42_RS04315 (AAVD42_04315) | comGG | 631071..631454 (-) | 384 | WP_345807839.1 | competence type IV pilus minor pilin ComGG | - |
| AAVD42_RS04320 (AAVD42_04320) | comGF | 631451..631855 (-) | 405 | WP_223250623.1 | competence type IV pilus minor pilin ComGF | - |
| AAVD42_RS04325 (AAVD42_04325) | comGE | 631890..632207 (-) | 318 | WP_345807840.1 | competence type IV pilus minor pilin ComGE | - |
| AAVD42_RS04330 (AAVD42_04330) | comGD | 632191..632637 (-) | 447 | WP_345807841.1 | competence type IV pilus minor pilin ComGD | - |
| AAVD42_RS04335 (AAVD42_04335) | comGC | 632630..632923 (-) | 294 | WP_003217322.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 13000.65 Da Isoelectric Point: 6.4834
>NTDB_id=995102 AAVD42_RS04285 WP_106065581.1 627793..628128(+) (sinR) [Bacillus pumilus strain FUA2116]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQREE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQREE
Nucleotide
Download Length: 336 bp
>NTDB_id=995102 AAVD42_RS04285 WP_106065581.1 627793..628128(+) (sinR) [Bacillus pumilus strain FUA2116]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAGAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAAGAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAGAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAAGAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
93.694 |
100 |
0.937 |