Detailed information
Bioinformatically predicted
Overview
| Name | degS | Type | Regulator |
| Locus tag | AAVC94_RS16485 | Genome accession | NZ_CP154906 |
| Coordinates | 3181576..3182751 (-) | Length | 391 a.a. |
| NCBI ID | WP_003213166.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain FUA2115 | ||
| Function | phosphorylation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3176576..3187751
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAVC94_RS16450 (AAVC94_16450) | - | 3176744..3177163 (-) | 420 | WP_003212865.1 | TIGR03826 family flagellar region protein | - |
| AAVC94_RS16455 (AAVC94_16455) | comFC | 3177220..3177726 (-) | 507 | WP_050782676.1 | phosphoribosyltransferase family protein | Machinery gene |
| AAVC94_RS16460 (AAVC94_16460) | - | 3177739..3177906 (-) | 168 | Protein_3174 | ComF family protein | - |
| AAVC94_RS16465 (AAVC94_16465) | - | 3177903..3178196 (-) | 294 | WP_106066158.1 | late competence development ComFB family protein | - |
| AAVC94_RS16470 (AAVC94_16470) | comFA | 3178263..3179387 (-) | 1125 | WP_253622114.1 | DEAD/DEAH box helicase | Machinery gene |
| AAVC94_RS16475 (AAVC94_16475) | - | 3179762..3180604 (-) | 843 | WP_226804196.1 | DegV family protein | - |
| AAVC94_RS16480 (AAVC94_16480) | degU | 3180822..3181511 (-) | 690 | WP_008348273.1 | two-component system response regulator DegU | Regulator |
| AAVC94_RS16485 (AAVC94_16485) | degS | 3181576..3182751 (-) | 1176 | WP_003213166.1 | sensor histidine kinase | Regulator |
| AAVC94_RS16490 (AAVC94_16490) | - | 3182973..3183641 (+) | 669 | WP_003212936.1 | YigZ family protein | - |
| AAVC94_RS16495 (AAVC94_16495) | - | 3183626..3184714 (+) | 1089 | WP_212045589.1 | LCP family protein | - |
| AAVC94_RS16500 (AAVC94_16500) | - | 3184749..3185816 (-) | 1068 | WP_003212692.1 | MraY family glycosyltransferase | - |
| AAVC94_RS16505 (AAVC94_16505) | - | 3185951..3187141 (-) | 1191 | WP_226805380.1 | glycosyltransferase | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 45523.25 Da Isoelectric Point: 5.8757
>NTDB_id=995091 AAVC94_RS16485 WP_003213166.1 3181576..3182751(-) (degS) [Bacillus pumilus strain FUA2115]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK
Nucleotide
Download Length: 1176 bp
>NTDB_id=995091 AAVC94_RS16485 WP_003213166.1 3181576..3182751(-) (degS) [Bacillus pumilus strain FUA2115]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTTGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGGGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTCACTATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGACGATTGTTAAGCCTACAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTATCTCAATCAGGACTTACGTCAAGTTGGCGTGTTACTT
GAAGATGCTCAAGCAAAACAAGATTTTGGACTTAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTATCCCGTGA
AATTCACGACGGTCCGGCCCAAATGCTGGCAAACGTAATGATGCGTTCCGAATTAATTGAACGTATTTTCAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATCACGTTCCAATGCCTAGGGGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTG
ACGAAAGACTTTGTTACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTTGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTTGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGGGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTCACTATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGACGATTGTTAAGCCTACAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTATCTCAATCAGGACTTACGTCAAGTTGGCGTGTTACTT
GAAGATGCTCAAGCAAAACAAGATTTTGGACTTAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTATCCCGTGA
AATTCACGACGGTCCGGCCCAAATGCTGGCAAACGTAATGATGCGTTCCGAATTAATTGAACGTATTTTCAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATCACGTTCCAATGCCTAGGGGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTG
ACGAAAGACTTTGTTACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTTGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| degS | Bacillus subtilis subsp. subtilis str. 168 |
85.455 |
98.465 |
0.841 |