Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AAVC94_RS14865 Genome accession   NZ_CP154906
Coordinates   2867174..2867815 (-) Length   213 a.a.
NCBI ID   WP_003213500.1    Uniprot ID   A0AB34QVB6
Organism   Bacillus pumilus strain FUA2115     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2862174..2872815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC94_RS14830 (AAVC94_14830) - 2863308..2863739 (+) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -
  AAVC94_RS14835 (AAVC94_14835) - 2863739..2864079 (+) 341 Protein_2851 Na(+)/H(+) antiporter subunit C -
  AAVC94_RS14840 (AAVC94_14840) - 2864072..2865550 (+) 1479 WP_034620106.1 Na+/H+ antiporter subunit D -
  AAVC94_RS14845 (AAVC94_14845) - 2865557..2866036 (+) 480 WP_044140819.1 Na+/H+ antiporter subunit E -
  AAVC94_RS14850 (AAVC94_14850) - 2866036..2866317 (+) 282 WP_003213177.1 Na(+)/H(+) antiporter subunit F1 -
  AAVC94_RS14855 (AAVC94_14855) mnhG 2866301..2866675 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  AAVC94_RS14860 (AAVC94_14860) - 2866761..2867150 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  AAVC94_RS14865 (AAVC94_14865) comA 2867174..2867815 (-) 642 WP_003213500.1 response regulator transcription factor Regulator
  AAVC94_RS14870 (AAVC94_14870) comP 2867896..2870181 (-) 2286 WP_253622277.1 ATP-binding protein Regulator
  AAVC94_RS14875 (AAVC94_14875) comX 2870188..2870367 (-) 180 WP_137054465.1 competence pheromone ComX -
  AAVC94_RS14880 (AAVC94_14880) - 2870345..2871268 (-) 924 WP_338423204.1 polyprenyl synthetase family protein -
  AAVC94_RS14885 (AAVC94_14885) degQ 2871420..2871560 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  AAVC94_RS14890 (AAVC94_14890) - 2872066..2872419 (+) 354 WP_212045491.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24155.54 Da        Isoelectric Point: 4.5204

>NTDB_id=995082 AAVC94_RS14865 WP_003213500.1 2867174..2867815(-) (comA) [Bacillus pumilus strain FUA2115]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQETDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=995082 AAVC94_RS14865 WP_003213500.1 2867174..2867815(-) (comA) [Bacillus pumilus strain FUA2115]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGGAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714

Multiple sequence alignment