Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AAVC22_RS19080 Genome accession   NZ_CP154902
Coordinates   3779403..3780032 (+) Length   209 a.a.
NCBI ID   WP_025811128.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain FUA2150     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3774403..3785032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC22_RS19045 (AAVC22_19050) aroE 3775045..3775881 (+) 837 WP_020452280.1 shikimate dehydrogenase -
  AAVC22_RS19050 (AAVC22_19055) yhbY 3775875..3776165 (+) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  AAVC22_RS19055 (AAVC22_19060) - 3776184..3776753 (+) 570 WP_025811125.1 nicotinate-nucleotide adenylyltransferase -
  AAVC22_RS19060 (AAVC22_19065) yqeK 3776743..3777306 (+) 564 WP_025811126.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  AAVC22_RS19065 (AAVC22_19070) rsfS 3777320..3777676 (+) 357 WP_023855256.1 ribosome silencing factor -
  AAVC22_RS19070 (AAVC22_19075) - 3777673..3778428 (+) 756 WP_023855255.1 class I SAM-dependent methyltransferase -
  AAVC22_RS19075 (AAVC22_19080) comER 3778499..3779320 (-) 822 WP_043054399.1 late competence protein ComER -
  AAVC22_RS19080 (AAVC22_19085) comEA 3779403..3780032 (+) 630 WP_025811128.1 helix-hairpin-helix domain-containing protein Machinery gene
  AAVC22_RS19085 (AAVC22_19090) - 3780101..3780670 (+) 570 WP_020452273.1 ComE operon protein 2 -
  AAVC22_RS19090 (AAVC22_19095) - 3780675..3783062 (+) 2388 WP_025811129.1 DNA internalization-related competence protein ComEC/Rec2 -
  AAVC22_RS19095 (AAVC22_19100) - 3783087..3783218 (-) 132 WP_003183686.1 YqzM family protein -
  AAVC22_RS19100 (AAVC22_19105) holA 3783448..3784473 (+) 1026 WP_023855252.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22569.46 Da        Isoelectric Point: 4.9006

>NTDB_id=995027 AAVC22_RS19080 WP_025811128.1 3779403..3780032(+) (comEA) [Bacillus paralicheniformis strain FUA2150]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGFSIPEEASAQTFDKKEEVKRKKNAGEEEVIIDLKGAVKNPGV
YQMKEGDRVHDALKKAGGTEKKADQKQINLAAVLRDGMVLYIPFEGEEAAGSLSEADSRADGSSSDIVNINTASSAELQT
IPGIGPSKAEAVVEYREENGMFQTIEDITNVSGIGEKSFERIKSSITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=995027 AAVC22_RS19080 WP_025811128.1 3779403..3780032(+) (comEA) [Bacillus paralicheniformis strain FUA2150]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCGGCGGGAGGTGTGGCACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCTTCTCCATTCCTGAAGAGGCTTCTGCACAGACTTTTGACAAGAAAG
AGGAGGTGAAGCGGAAAAAAAACGCGGGGGAAGAGGAGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAGGAGGGAGACAGGGTGCACGATGCATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGACCAAAAGCA
GATTAATCTGGCAGCCGTTTTGCGGGACGGTATGGTTCTTTACATTCCATTTGAAGGGGAAGAGGCCGCTGGCTCTCTTT
CGGAAGCGGACTCAAGAGCAGACGGCAGCTCAAGTGATATCGTCAATATCAATACGGCTTCCTCTGCGGAGCTTCAGACG
ATTCCCGGGATCGGTCCTTCAAAAGCGGAAGCGGTAGTCGAATACCGCGAGGAGAACGGAATGTTTCAGACGATTGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTTCCATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(145-207)

SLBB domain (SLBB)

(69-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

51.402

100

0.526
  comEA Staphylococcus aureus MW2

36.818

100

0.388
  comEA Staphylococcus aureus N315

36.818

100

0.388

Multiple sequence alignment