Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EW031_RS09155 Genome accession   NZ_LR130518
Coordinates   1770624..1771226 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain BPH2986 isolate BPH2986     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1765624..1776226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW031_RS09135 yajC 1767120..1767380 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  EW031_RS09140 tgt 1767399..1768538 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  EW031_RS09145 queA 1768561..1769586 (-) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  EW031_RS09150 ruvB 1769588..1770592 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  EW031_RS09155 ruvA 1770624..1771226 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  EW031_RS09160 - 1771240..1771695 (-) 456 WP_000368902.1 ACT domain-containing protein -
  EW031_RS09165 obgE 1771708..1773000 (-) 1293 WP_000496100.1 GTPase ObgE -
  EW031_RS09170 rpmA 1773355..1773639 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  EW031_RS09175 - 1773651..1773971 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  EW031_RS09180 rplU 1773977..1774285 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  EW031_RS09185 mreD 1774452..1774982 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  EW031_RS09190 mreC 1774982..1775824 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  EW031_RS09195 - 1776024..1776143 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=994978 EW031_RS09155 WP_000271547.1 1770624..1771226(-) (ruvA) [Staphylococcus aureus strain BPH2986 isolate BPH2986]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=994978 EW031_RS09155 WP_000271547.1 1770624..1771226(-) (ruvA) [Staphylococcus aureus strain BPH2986 isolate BPH2986]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment