Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EW033_RS09055 Genome accession   NZ_LR130515
Coordinates   1773228..1773830 (-) Length   200 a.a.
NCBI ID   WP_000271544.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2947 isolate BPH2947     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1768228..1778830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW033_RS09035 yajC 1769724..1769984 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  EW033_RS09040 tgt 1770003..1771142 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  EW033_RS09045 queA 1771165..1772190 (-) 1026 WP_001019171.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  EW033_RS09050 ruvB 1772192..1773196 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  EW033_RS09055 ruvA 1773228..1773830 (-) 603 WP_000271544.1 Holliday junction branch migration protein RuvA Machinery gene
  EW033_RS09060 - 1773844..1774299 (-) 456 WP_000368902.1 ACT domain-containing protein -
  EW033_RS09065 obgE 1774312..1775604 (-) 1293 WP_000496100.1 GTPase ObgE -
  EW033_RS09070 rpmA 1775959..1776243 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  EW033_RS09075 - 1776255..1776575 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  EW033_RS09080 rplU 1776581..1776889 (-) 309 WP_000457385.1 50S ribosomal protein L21 -
  EW033_RS09085 mreD 1777056..1777587 (-) 532 Protein_1713 rod shape-determining protein MreD -
  EW033_RS09090 mreC 1777587..1778429 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  EW033_RS09095 - 1778629..1778748 (-) 120 Protein_1715 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22236.42 Da        Isoelectric Point: 6.2380

>NTDB_id=994888 EW033_RS09055 WP_000271544.1 1773228..1773830(-) (ruvA) [Staphylococcus aureus strain BPH2947 isolate BPH2947]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLHGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=994888 EW033_RS09055 WP_000271544.1 1773228..1773830(-) (ruvA) [Staphylococcus aureus strain BPH2947 isolate BPH2947]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGCATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae R6

45.226

99.5

0.45
  ruvA Streptococcus pneumoniae D39

45.226

99.5

0.45
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.211

99.5

0.42

Multiple sequence alignment