Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EW029_RS08465 Genome accession   NZ_LR130513
Coordinates   1708109..1708711 (-) Length   200 a.a.
NCBI ID   WP_000271551.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2900 isolate BPH2900     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1703109..1713711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW029_RS08445 yajC 1704605..1704865 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  EW029_RS08450 tgt 1704884..1706023 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  EW029_RS08455 queA 1706046..1707071 (-) 1026 WP_001008435.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  EW029_RS08460 ruvB 1707073..1708077 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  EW029_RS08465 ruvA 1708109..1708711 (-) 603 WP_000271551.1 Holliday junction branch migration protein RuvA Machinery gene
  EW029_RS08470 - 1708725..1709180 (-) 456 WP_000368899.1 ACT domain-containing protein -
  EW029_RS08475 obgE 1709193..1710485 (-) 1293 WP_000496100.1 GTPase ObgE -
  EW029_RS08480 rpmA 1710705..1710989 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  EW029_RS08485 - 1711001..1711321 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  EW029_RS08490 rplU 1711327..1711635 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  EW029_RS08495 mreD 1711871..1712401 (-) 531 WP_001259930.1 rod shape-determining protein MreD -
  EW029_RS08500 mreC 1712401..1713243 (-) 843 WP_000911037.1 rod shape-determining protein MreC -
  EW029_RS08505 - 1713443..1713562 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22253.45 Da        Isoelectric Point: 5.7132

>NTDB_id=994800 EW029_RS08465 WP_000271551.1 1708109..1708711(-) (ruvA) [Staphylococcus aureus strain BPH2900 isolate BPH2900]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKQLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=994800 EW029_RS08465 WP_000271551.1 1708109..1708711(-) (ruvA) [Staphylococcus aureus strain BPH2900 isolate BPH2900]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCAACTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(156-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.734

99.5

0.465
  ruvA Streptococcus pneumoniae R6

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae D39

46.231

99.5

0.46
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment