Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AAVB98_RS13805 Genome accession   NZ_CP154895
Coordinates   2648081..2648725 (+) Length   214 a.a.
NCBI ID   WP_345816777.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2643081..2653725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS13780 (AAVB98_13780) - 2643503..2643844 (-) 342 WP_013353399.1 hypothetical protein -
  AAVB98_RS13785 (AAVB98_13785) degQ 2644309..2644449 (+) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  AAVB98_RS13790 (AAVB98_13790) - 2644601..2645476 (+) 876 WP_013353397.1 polyprenyl synthetase family protein -
  AAVB98_RS13795 (AAVB98_13795) comX 2645495..2645671 (+) 177 WP_013353396.1 competence pheromone ComX -
  AAVB98_RS13800 (AAVB98_13800) comP 2645694..2648000 (+) 2307 WP_013353395.1 histidine kinase Regulator
  AAVB98_RS13805 (AAVB98_13805) comA 2648081..2648725 (+) 645 WP_345816777.1 response regulator transcription factor Regulator
  AAVB98_RS13810 (AAVB98_13810) - 2648747..2649130 (+) 384 WP_013353393.1 hotdog fold thioesterase -
  AAVB98_RS13815 (AAVB98_13815) mnhG 2649170..2649544 (-) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  AAVB98_RS13820 (AAVB98_13820) - 2649528..2649812 (-) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  AAVB98_RS13825 (AAVB98_13825) - 2649812..2650288 (-) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  AAVB98_RS13830 (AAVB98_13830) - 2650294..2651775 (-) 1482 WP_013353389.1 Na+/H+ antiporter subunit D -
  AAVB98_RS13835 (AAVB98_13835) - 2651768..2652109 (-) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  AAVB98_RS13840 (AAVB98_13840) - 2652109..2652540 (-) 432 WP_013353387.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24287.67 Da        Isoelectric Point: 4.9953

>NTDB_id=994791 AAVB98_RS13805 WP_345816777.1 2648081..2648725(+) (comA) [Bacillus amyloliquefaciens strain Fad 77]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
IFQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=994791 AAVB98_RS13805 WP_345816777.1 2648081..2648725(+) (comA) [Bacillus amyloliquefaciens strain Fad 77]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTTTACACAGGTTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGTCTGCACGGTGCCATCAGCAAAAC
CGAGTCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTTTTCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGTACAGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.514

100

0.855

Multiple sequence alignment