Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EW022_RS08805 Genome accession   NZ_LR130240
Coordinates   1760302..1760898 (-) Length   198 a.a.
NCBI ID   WP_011285268.1    Uniprot ID   Q48QW4
Organism   Streptococcus pyogenes strain PS006 isolate PS006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1755302..1765898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW022_RS08770 - 1755362..1755667 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  EW022_RS08775 ruvX 1755679..1756098 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  EW022_RS08780 - 1756095..1756364 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  EW022_RS08785 spx 1756478..1756876 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  EW022_RS08790 recA 1757167..1758303 (-) 1137 WP_011285265.1 recombinase RecA Machinery gene
  EW022_RS08795 cinA 1758392..1759663 (-) 1272 WP_011285266.1 competence/damage-inducible protein A Machinery gene
  EW022_RS08800 - 1759732..1760292 (-) 561 WP_011018314.1 DNA-3-methyladenine glycosylase I -
  EW022_RS08805 ruvA 1760302..1760898 (-) 597 WP_011285268.1 Holliday junction branch migration protein RuvA Machinery gene
  EW022_RS08810 - 1760900..1762120 (-) 1221 WP_011285269.1 MDR family MFS transporter -
  EW022_RS08815 hexB 1762131..1764113 (-) 1983 WP_021340699.1 DNA mismatch repair endonuclease MutL Machinery gene
  EW022_RS08820 - 1764208..1765359 (-) 1152 WP_003058754.1 tyrosine-type recombinase/integrase -
  EW022_RS09625 - 1765608..1765751 (+) 144 WP_011185066.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21811.12 Da        Isoelectric Point: 6.2537

>NTDB_id=994554 EW022_RS08805 WP_011285268.1 1760302..1760898(-) (ruvA) [Streptococcus pyogenes strain PS006 isolate PS006]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKAAELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=994554 EW022_RS08805 WP_011285268.1 1760302..1760898(-) (ruvA) [Streptococcus pyogenes strain PS006 isolate PS006]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCTGGCATT
GGCCCCACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAGCGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q48QW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae R6

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae D39

67.005

99.495

0.667
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424