Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EW023_RS07330 Genome accession   NZ_LR130239
Coordinates   1445551..1446585 (-) Length   344 a.a.
NCBI ID   WP_023611934.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain PS003 isolate PS003     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1440551..1451585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW023_RS07295 - 1441327..1441629 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  EW023_RS07300 rnpM 1441622..1441918 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  EW023_RS07305 nusA 1441934..1443091 (-) 1158 WP_023611711.1 transcription termination factor NusA -
  EW023_RS07310 rimP 1443266..1443802 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  EW023_RS07320 trmB 1444061..1444696 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EW023_RS07325 ccrZ 1444696..1445487 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  EW023_RS07330 pptB 1445551..1446585 (-) 1035 WP_023611934.1 ABC transporter permease Regulator
  EW023_RS07335 pptA 1446588..1447313 (-) 726 WP_023611908.1 ABC transporter ATP-binding protein Regulator
  EW023_RS07340 - 1447385..1447804 (+) 420 WP_023611931.1 HIT family protein -
  EW023_RS07345 - 1447801..1448157 (+) 357 WP_014407784.1 hypothetical protein -
  EW023_RS07350 brpA 1448268..1449551 (-) 1284 WP_023611938.1 biofilm formation/cell division transcriptional regulator BrpA -
  EW023_RS07355 - 1449560..1450084 (-) 525 WP_023611919.1 GNAT family N-acetyltransferase -
  EW023_RS07360 tsaE 1450059..1450520 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40260.49 Da        Isoelectric Point: 10.3713

>NTDB_id=994442 EW023_RS07330 WP_023611934.1 1445551..1446585(-) (pptB) [Streptococcus pyogenes strain PS003 isolate PS003]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSMLKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=994442 EW023_RS07330 WP_023611934.1 1445551..1446585(-) (pptB) [Streptococcus pyogenes strain PS003 isolate PS003]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATGTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

42.733

100

0.427

  pptB Streptococcus salivarius strain HSISS4

42.442

100

0.424


Multiple sequence alignment