Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   AAYT22_RS09275 Genome accession   NZ_CP154876
Coordinates   1791955..1792368 (-) Length   137 a.a.
NCBI ID   WP_000265620.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20155336     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1786955..1797368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYT22_RS09245 (AAYT22_09235) - 1787650..1788474 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  AAYT22_RS09250 (AAYT22_09240) rnpA 1788449..1788820 (-) 372 WP_000739246.1 ribonuclease P protein component -
  AAYT22_RS09255 (AAYT22_09245) - 1788837..1788968 (-) 132 WP_000768904.1 hypothetical protein -
  AAYT22_RS09260 (AAYT22_09250) - 1788969..1790159 (-) 1191 WP_000167753.1 acetate kinase -
  AAYT22_RS09265 (AAYT22_09255) comYH 1790210..1791163 (-) 954 WP_000345126.1 class I SAM-dependent methyltransferase Machinery gene
  AAYT22_RS09270 (AAYT22_09260) - 1791224..1791818 (-) 595 Protein_1799 class I SAM-dependent methyltransferase -
  AAYT22_RS09275 (AAYT22_09265) comGG/cglG 1791955..1792368 (-) 414 WP_000265620.1 competence type IV pilus minor pilin ComGG Machinery gene
  AAYT22_RS09280 (AAYT22_09270) comGF/cglF 1792346..1792807 (-) 462 WP_000250540.1 competence type IV pilus minor pilin ComGF Machinery gene
  AAYT22_RS09285 (AAYT22_09275) comGE/cglE 1792770..1793072 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  AAYT22_RS09290 (AAYT22_09280) comGD/cglD 1793035..1793439 (-) 405 WP_000588023.1 competence type IV pilus minor pilin ComGD Machinery gene
  AAYT22_RS09295 (AAYT22_09285) comGC/cglC 1793432..1793758 (-) 327 WP_000738631.1 comG operon protein ComGC Machinery gene
  AAYT22_RS09300 (AAYT22_09290) comGB/cglB 1793760..1794776 (-) 1017 WP_075218762.1 competence type IV pilus assembly protein ComGB Machinery gene
  AAYT22_RS09305 (AAYT22_09295) comGA/cglA/cilD 1794724..1795665 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  AAYT22_RS09310 (AAYT22_09300) - 1795741..1796106 (-) 366 WP_000286415.1 DUF1033 family protein -
  AAYT22_RS09315 (AAYT22_09305) - 1796257..1797315 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15888.33 Da        Isoelectric Point: 10.2476

>NTDB_id=994402 AAYT22_RS09275 WP_000265620.1 1791955..1792368(-) (comGG/cglG) [Streptococcus pneumoniae strain 20155336]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEIATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=994402 AAYT22_RS09275 WP_000265620.1 1791955..1792368(-) (comGG/cglG) [Streptococcus pneumoniae strain 20155336]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCAATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGATAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae D39

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae R6

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

85.401

0.81

  comGG/cglG Streptococcus mitis NCTC 12261

89.256

88.321

0.788

  comGG/cglG Streptococcus mitis SK321

85.95

88.321

0.759


Multiple sequence alignment