Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AAG092_RS07590 Genome accession   NZ_CP154874
Coordinates   1559303..1560643 (+) Length   446 a.a.
NCBI ID   WP_373389194.1    Uniprot ID   -
Organism   Pseudomonas alcaligenes strain Med1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554303..1565643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS07565 (AAG092_07515) pgeF 1554507..1555241 (-) 735 WP_373389189.1 peptidoglycan editing factor PgeF -
  AAG092_RS07570 (AAG092_07520) rluD 1555225..1556196 (-) 972 WP_373389190.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AAG092_RS07575 (AAG092_07525) - 1556344..1557366 (+) 1023 WP_373389191.1 outer membrane protein assembly factor BamD -
  AAG092_RS07580 (AAG092_07530) - 1557488..1557718 (+) 231 WP_373389192.1 PP0621 family protein -
  AAG092_RS07585 (AAG092_07535) pilS 1557708..1559300 (+) 1593 WP_373389193.1 PAS domain-containing sensor histidine kinase Regulator
  AAG092_RS07590 (AAG092_07540) pilR 1559303..1560643 (+) 1341 WP_373389194.1 sigma-54-dependent transcriptional regulator Regulator
  AAG092_RS07595 (AAG092_07545) - 1560692..1561762 (-) 1071 WP_373389195.1 NAD(P)/FAD-dependent oxidoreductase -
  AAG092_RS07600 (AAG092_07550) - 1561876..1562385 (+) 510 WP_373389196.1 GspH/FimT family pseudopilin -
  AAG092_RS07605 (AAG092_07555) - 1562491..1562982 (+) 492 WP_110681358.1 GspH/FimT family pseudopilin -
  AAG092_RS07610 (AAG092_07560) pilV 1562979..1563491 (+) 513 WP_373389197.1 type IV pilus modification protein PilV -
  AAG092_RS07615 (AAG092_07565) - 1563491..1564258 (+) 768 WP_373389198.1 PilW family protein -
  AAG092_RS07620 (AAG092_07570) - 1564255..1564818 (+) 564 WP_110680799.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49733.13 Da        Isoelectric Point: 5.6365

>NTDB_id=994324 AAG092_RS07590 WP_373389194.1 1559303..1560643(+) (pilR) [Pseudomonas alcaligenes strain Med1]
MSTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLELVQHIQQRHAQVPVA
MITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRLRSGENSEGPVDTRLLGESPPMKTLRQQIQKLARSQAPV
YISGESGSGKELVARLIHEQGPRAEKPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAADGGTLFLDEVADL
PLTMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLFYRLNVIELRVPPLRERREDIPLLADT
MLRRLAEGSGLPAARLTGEALDKLKCYRFPGNVRELENMLERAYTLCEDDLIQAADLRLADAAPASDSGDASLAQIDNLE
DYLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=994324 AAG092_RS07590 WP_373389194.1 1559303..1560643(+) (pilR) [Pseudomonas alcaligenes strain Med1]
ATGAGCACCCGGCAGAGAGCCCTGATCGTCGACGACGAACCCGACATCCGCGAACTCCTGGAGATCACTCTGGGGCGCAT
GAAGCTCGACACGCGCAGCGCGCGCAACGTCAAGGAGGCCCGCGAGTGGCTGGCGCGCGAGCCGTTCGACCTGTGCCTGA
CCGACATGCGTCTGCCGGACGGCACCGGCCTGGAGCTGGTTCAGCACATCCAGCAGCGCCATGCCCAGGTGCCGGTGGCC
ATGATCACCGCCTACGGCAGCCTGGACACCGCGATCAACGCCCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGT
GGACCTCGGCCGCCTGCGCGAACTGGTGGCCACCGCCCTGCGCCTGCGCAGCGGCGAGAACAGCGAGGGCCCGGTGGACA
CCCGCCTGCTCGGCGAGTCGCCGCCAATGAAAACCCTGCGCCAGCAGATCCAGAAGCTGGCGCGCAGCCAGGCGCCGGTC
TACATCAGCGGTGAGTCGGGCAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGCCCGCGCGCGGAGAAGCC
CTTCGTGCCGGTCAACTGCGGCGCCATTCCCTCGGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGGGCAGTTTCA
CCGGTGCCATCGAGGACAAGCAGGGCCTGTTCCAGGCCGCCGATGGCGGCACCCTGTTCCTCGACGAAGTCGCCGATCTG
CCGCTGACCATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAAGCCGTGCGCGCCGTCGGCGGCCAACAGGAGGTGGT
GGTGGACGTGCGCATCCTCTGCGCCACGCACAAGGACCTGGCCGCCGAGGTGGCCGCCGGGCGCTTCCGCCAGGACCTGT
TCTACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAGCGCCGCGAGGACATCCCGCTGCTGGCCGACACC
ATGCTCCGGCGCCTGGCCGAAGGCAGCGGCCTGCCGGCGGCCAGGCTCACCGGCGAGGCCCTGGACAAGCTCAAGTGCTA
CCGTTTCCCCGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGTGCCTACACCCTGTGCGAGGACGACCTGATCCAGG
CCGCCGACCTGCGCCTGGCGGACGCCGCCCCGGCCAGCGACAGCGGCGACGCCTCGCTGGCGCAGATCGACAATCTGGAA
GACTACCTGGAAGAGATCGAGCGCAAGCTGATCATGCAGGCGCTGGAGGAAACCCGCTGGAATCGCACCGCCGCCGCCCA
GCGCCTGGGGCTGACTTTCCGCTCCATGCGCTACCGCCTGAAGAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.964

99.552

0.886
  pilR Acinetobacter baumannii strain A118

50.545

100

0.52

Multiple sequence alignment