Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AAIA72_RS07905 Genome accession   NZ_CP154858
Coordinates   1613996..1615360 (+) Length   454 a.a.
NCBI ID   WP_369602859.1    Uniprot ID   A0AB39V1B2
Organism   Hahella sp. SMD15-11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1608996..1620360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIA72_RS07890 (AAIA72_07880) - 1609819..1610697 (+) 879 WP_369602856.1 outer membrane protein assembly factor BamD -
  AAIA72_RS07895 (AAIA72_07885) - 1610661..1612292 (-) 1632 WP_369602857.1 NAD+ synthase -
  AAIA72_RS07900 (AAIA72_07890) - 1612390..1613988 (+) 1599 WP_369602858.1 PAS domain-containing sensor histidine kinase -
  AAIA72_RS07905 (AAIA72_07895) pilR 1613996..1615360 (+) 1365 WP_369602859.1 sigma-54-dependent transcriptional regulator Regulator
  AAIA72_RS07910 (AAIA72_07900) thiO 1615366..1616481 (-) 1116 WP_369602860.1 glycine oxidase ThiO -
  AAIA72_RS07915 (AAIA72_07905) - 1616563..1617111 (+) 549 WP_369602861.1 GspH/FimT family protein -
  AAIA72_RS07920 (AAIA72_07910) - 1617153..1617584 (-) 432 WP_369602862.1 type IV pilin protein -
  AAIA72_RS07925 (AAIA72_07915) - 1617584..1617994 (-) 411 WP_369602863.1 hypothetical protein -
  AAIA72_RS07930 (AAIA72_07920) - 1617991..1620162 (-) 2172 WP_369602864.1 pilus assembly protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49980.22 Da        Isoelectric Point: 5.5307

>NTDB_id=994129 AAIA72_RS07905 WP_369602859.1 1613996..1615360(+) (pilR) [Hahella sp. SMD15-11]
MAQNILIVDDEPDIRDLLEITLIRMGHQTQTAENLRAARDALDTHTFDLCLTDMNLPDGNGIDLVRHIQKHHPNTPVAVI
TAYGSVDAAIAALKAGAFDFVSKPVELSRLRELVTTALKLSAGKTDNRDLKRELLGTSPAMSTLRRQIRKLARSQAPIYI
SGESGSGKELVARMIHSQGPRADGPFIPVNCGAIPSELMESEFFGHRKGAFTGATDNKTGLFQAANGGTLFLDEVADLPL
PMQVKLLRAIQEKAVRPVGDEQEYPVDVRILAATHKNLQNEVAEGRFRQDLFYRINVIELKVPPLRERKEDIPLLARHIL
DKLSAECDLPPMGISQAALDKLLAYSFPGNVRELENILERAFTLCEGEEIGPDDLALEPAPAGTATDDSGHSQVLGATPE
IPVNLNLEDFLESIEKQAIEKALEETRWNKTAAAKKLGISFRALRYRLKKLGME

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=994129 AAIA72_RS07905 WP_369602859.1 1613996..1615360(+) (pilR) [Hahella sp. SMD15-11]
ATGGCCCAGAACATCCTGATTGTTGACGACGAACCGGATATCCGCGACCTGCTCGAAATCACCCTGATCCGCATGGGGCA
TCAGACGCAAACCGCAGAAAACCTCCGGGCTGCACGGGACGCTCTGGATACGCACACCTTTGACCTGTGCCTGACCGACA
TGAATCTGCCCGACGGCAACGGCATCGATCTGGTGCGCCACATCCAGAAACACCATCCCAACACGCCGGTTGCCGTGATC
ACCGCCTATGGCAGTGTGGACGCGGCGATTGCCGCACTCAAGGCCGGCGCCTTCGACTTCGTGTCCAAGCCGGTCGAGCT
GTCGCGCCTGCGCGAACTGGTCACCACCGCGCTCAAGCTGAGTGCAGGCAAGACGGATAACCGGGACCTCAAGCGCGAGC
TGCTGGGCACCTCGCCGGCCATGTCCACCCTGCGCCGCCAGATCCGCAAGCTGGCACGGAGTCAGGCCCCCATCTACATC
AGCGGGGAATCGGGCAGTGGCAAGGAGCTGGTTGCCCGCATGATTCACAGTCAGGGCCCGCGTGCGGACGGGCCGTTCAT
CCCTGTCAACTGCGGTGCCATTCCTTCCGAACTGATGGAAAGCGAATTCTTCGGCCACCGCAAGGGCGCCTTCACCGGGG
CCACGGACAACAAGACCGGCCTCTTTCAGGCTGCCAATGGCGGTACCCTGTTTCTGGATGAAGTGGCCGATCTGCCGCTG
CCCATGCAGGTCAAGCTCCTGCGCGCCATTCAGGAAAAGGCCGTCCGCCCGGTGGGTGATGAGCAGGAATATCCCGTGGA
TGTGCGGATTCTCGCCGCCACTCACAAGAATCTGCAGAACGAAGTGGCCGAGGGACGTTTCCGCCAGGATCTGTTCTACC
GCATCAACGTGATTGAGCTGAAGGTACCGCCGCTGCGCGAACGCAAGGAAGACATCCCCCTGCTGGCACGCCACATTCTG
GACAAACTGTCCGCCGAGTGCGACCTGCCGCCCATGGGCATTTCCCAAGCTGCCCTGGACAAACTGCTCGCCTACAGCTT
CCCGGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCCTTCACGCTCTGCGAAGGCGAAGAAATCGGCCCGGACG
ACCTGGCGCTGGAACCTGCTCCTGCCGGCACGGCAACGGACGACTCCGGACACAGCCAGGTACTCGGTGCCACACCGGAA
ATTCCCGTCAACCTCAATCTCGAGGATTTTCTGGAATCCATCGAGAAACAGGCCATCGAGAAAGCGCTGGAAGAGACGCG
CTGGAACAAGACCGCCGCAGCCAAAAAGCTGGGAATCAGCTTTCGAGCCCTGCGCTACCGCCTCAAGAAGCTGGGCATGG
AGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(410-451)

Sigma-54 interaction domain (Sigma54_activat)

(135-300)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

65.265

99.559

0.65
  pilR Acinetobacter baumannii strain A118

51.416

100

0.52
  luxO Vibrio cholerae strain A1552

40

92.511

0.37

Multiple sequence alignment