Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAEQ75_RS09760 Genome accession   NZ_CP154631
Coordinates   2050597..2052090 (-) Length   497 a.a.
NCBI ID   WP_343351973.1    Uniprot ID   -
Organism   Pseudomonas sediminis strain I4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2045597..2057090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEQ75_RS09745 (AAEQ75_09745) - 2045998..2047383 (-) 1386 WP_343351967.1 NorM family multidrug efflux MATE transporter -
  AAEQ75_RS09750 (AAEQ75_09750) - 2047523..2048443 (+) 921 WP_343351969.1 LysR substrate-binding domain-containing protein -
  AAEQ75_RS09755 (AAEQ75_09755) - 2048619..2050595 (+) 1977 WP_343351971.1 methyl-accepting chemotaxis protein -
  AAEQ75_RS09760 (AAEQ75_09760) comM 2050597..2052090 (-) 1494 WP_343351973.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAEQ75_RS09765 (AAEQ75_09765) - 2052183..2052440 (-) 258 WP_106735048.1 accessory factor UbiK family protein -
  AAEQ75_RS09770 (AAEQ75_09770) glnK 2052850..2053188 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  AAEQ75_RS09775 (AAEQ75_09775) - 2053523..2054776 (+) 1254 WP_143507676.1 ammonium transporter -
  AAEQ75_RS09780 (AAEQ75_09780) - 2054875..2055300 (+) 426 WP_343351977.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AAEQ75_RS09785 (AAEQ75_09785) sutA 2055378..2055701 (+) 324 WP_179575164.1 transcriptional regulator SutA -
  AAEQ75_RS09790 (AAEQ75_09790) - 2055879..2056580 (-) 702 WP_179575166.1 HAD-IA family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52832.64 Da        Isoelectric Point: 7.7776

>NTDB_id=993853 AAEQ75_RS09760 WP_343351973.1 2050597..2052090(-) (comM) [Pseudomonas sediminis strain I4]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPSLTLVGLPETAVKESKDRVRSAILNAAFEFPSKRITLNLAPADLPKDGGR
FDLAIALGILAASGQVPAQSLDEYECLGELALSGAVRPVQGVLPAALAARAAGRTLLVPQANAEEASLASGLKVIAVEHL
LQIAAHLNGSDPLELYAAQGLLRQSLPYPDLAEVQGQLAAKRALLVAAAGSHNLLLSGPPGTGKTLLASRLPGLLPTLDE
NEALQVAAIHSVASHTPLQHWPQRPFRTPHHSASGPALVGGGSRPQPGEITLAHMGILFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPSNRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVARETTALNAPPQD
GESTAQAAAKVAQARERQLQRQGVANAFLDLPGLRQHCALSDADRQWLENACERLGLSLRAAHRVLKVARTLADLASEQQ
ISRAHLAEALQYRPAAG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=993853 AAEQ75_RS09760 WP_343351973.1 2050597..2052090(-) (comM) [Pseudomonas sediminis strain I4]
ATGTCCCTGGCCATCGTTCACAGCCGCGCCCAGGTCGGTGTAGAAGCACCGGCCGTCACCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCCTCTCTGACCCTGGTGGGTCTGCCGGAAACCGCAGTCAAGGAGAGCAAGGATCGCGTACGCAGCGCCATCC
TCAATGCTGCCTTCGAGTTTCCCAGCAAACGCATCACCTTGAATCTTGCGCCTGCAGATCTGCCAAAAGACGGTGGTCGC
TTCGACCTCGCCATCGCCTTGGGGATTCTCGCGGCCAGCGGCCAGGTACCAGCTCAATCGCTGGATGAATACGAATGCCT
GGGCGAGCTGGCGCTATCAGGCGCGGTGCGTCCCGTGCAAGGCGTATTGCCGGCTGCCCTGGCCGCACGCGCAGCCGGAC
GCACCCTCTTGGTGCCGCAGGCCAATGCCGAAGAGGCCAGCCTGGCCTCGGGGTTGAAGGTAATCGCCGTCGAGCACTTG
CTGCAGATCGCTGCGCACCTGAACGGCAGCGACCCTCTCGAACTCTACGCGGCCCAGGGCCTGCTCAGGCAGAGCCTGCC
CTATCCGGACCTGGCCGAAGTGCAGGGCCAGTTGGCCGCCAAACGGGCGTTACTGGTAGCGGCCGCCGGCTCGCACAATC
TGCTGCTCAGCGGCCCACCCGGCACAGGCAAAACCCTGCTGGCCAGCCGCCTGCCAGGCCTGCTACCTACGCTTGACGAA
AACGAGGCGCTGCAGGTAGCCGCGATCCATTCGGTGGCCAGCCATACGCCTCTGCAGCACTGGCCGCAGCGACCCTTTCG
CACCCCGCACCACAGCGCCTCCGGCCCGGCATTGGTGGGTGGCGGCAGTCGCCCGCAGCCTGGCGAAATAACCTTGGCCC
ATATGGGCATCCTGTTCCTCGATGAGCTACCGGAATTCGACAGGAAAGTGCTGGAAGTGCTGCGCGAACCACTGGAAAGC
GGCCACATCGTCATCGCCCGAGCCCGCGACAAGGTGCGCTTTCCCGCTCGTTTTCAGCTCGTTGCCGCCATGAACCCCTG
CCCTTGCGGCTACCTCGGCGACCCGAGCAATCGCTGTCGCTGTACCCCGGAGCAGATCCAGCGCTACCGCGCCAAGTTGT
CGGGCCCGCTCCTTGATCGCATCGACCTGCACCTGACGGTCGCCCGCGAAACCACAGCCCTGAATGCACCACCGCAGGAT
GGCGAAAGCACTGCGCAGGCAGCAGCCAAGGTGGCGCAGGCACGTGAGCGCCAATTGCAACGCCAGGGCGTGGCCAACGC
CTTTCTCGACCTACCCGGTCTGCGCCAACACTGCGCATTGAGCGACGCGGATCGCCAGTGGCTGGAAAACGCCTGCGAAC
GTCTCGGGCTGTCCCTGCGCGCGGCCCATCGCGTACTCAAGGTCGCGCGCACTCTGGCCGACCTGGCGAGCGAGCAGCAG
ATCAGCCGCGCCCACCTGGCTGAAGCGCTGCAGTACAGACCGGCAGCGGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.172

99.598

0.569
  comM Vibrio campbellii strain DS40M4

56.566

99.598

0.563
  comM Glaesserella parasuis strain SC1401

55.511

100

0.557
  comM Haemophilus influenzae Rd KW20

55.2

100

0.555
  comM Legionella pneumophila str. Paris

50.395

100

0.513
  comM Legionella pneumophila strain ERS1305867

50.395

100

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.23

100

0.469

Multiple sequence alignment