Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EQB41_RS12445 Genome accession   NZ_LR129840
Coordinates   1455022..1455744 (-) Length   240 a.a.
NCBI ID   WP_001010372.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4496 isolate 4496     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1450022..1460744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB41_RS07820 - 1452596..1453762 (-) 1167 WP_000521365.1 MalY/PatB family protein -
  EQB41_RS07825 - 1453770..1454864 (-) 1095 WP_000031966.1 cystathionine gamma-synthase -
  EQB41_RS12445 rcrP 1455022..1455744 (-) 723 WP_001010372.1 ABC transporter ATP-binding protein Regulator
  EQB41_RS12450 - 1455769..1456704 (-) 936 Protein_1489 ABC transporter ATP-binding protein -
  EQB41_RS07835 amiA 1456876..1458834 (-) 1959 WP_127820819.1 peptide ABC transporter substrate-binding protein Regulator
  EQB41_RS07840 - 1459037..1460659 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27137.99 Da        Isoelectric Point: 5.0452

>NTDB_id=993724 EQB41_RS12445 WP_001010372.1 1455022..1455744(-) (rcrP) [Streptococcus pneumoniae strain 4496 isolate 4496]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGQSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=993724 EQB41_RS12445 WP_001010372.1 1455022..1455744(-) (rcrP) [Streptococcus pneumoniae strain 4496 isolate 4496]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

37.238

99.583

0.371
  rcrQ Streptococcus mutans UA159

36.667

100

0.367
  comA Streptococcus mitis SK321

37.607

97.5

0.367
  comA/nlmT Streptococcus mutans UA159

37.826

95.833

0.362
  comA Streptococcus mitis NCTC 12261

37.179

97.5

0.362

Multiple sequence alignment