Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   AAIS09_RS09245 Genome accession   NZ_CP154595
Coordinates   1821461..1822471 (-) Length   336 a.a.
NCBI ID   WP_000990606.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain serotype 4     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1816461..1827471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIS09_RS09220 (AAIS09_09205) - 1817717..1818010 (-) 294 WP_061813566.1 hypothetical protein -
  AAIS09_RS09225 (AAIS09_09210) - 1818172..1818624 (+) 453 WP_000079148.1 universal stress protein -
  AAIS09_RS09230 (AAIS09_09215) - 1818659..1820047 (-) 1389 WP_000453139.1 Cof-type HAD-IIB family hydrolase -
  AAIS09_RS09235 (AAIS09_09220) - 1820113..1821075 (+) 963 WP_061813565.1 asparaginase -
  AAIS09_RS09240 (AAIS09_09225) - 1821104..1821397 (-) 294 WP_001092046.1 hypothetical protein -
  AAIS09_RS09245 (AAIS09_09230) ccpA 1821461..1822471 (-) 1011 WP_000990606.1 catabolite control protein A Regulator
  AAIS09_RS09250 (AAIS09_09235) - 1822896..1823495 (-) 600 WP_000866724.1 response regulator transcription factor -
  AAIS09_RS09255 (AAIS09_09240) - 1823497..1824594 (-) 1098 WP_000893550.1 sensor histidine kinase -
  AAIS09_RS09260 (AAIS09_09245) - 1824594..1825331 (-) 738 WP_000832843.1 ABC transporter permease -
  AAIS09_RS09265 (AAIS09_09250) - 1825333..1826217 (-) 885 WP_044789292.1 ABC transporter ATP-binding protein -
  AAIS09_RS09270 (AAIS09_09255) - 1826204..1826398 (-) 195 WP_000820182.1 hypothetical protein -
  AAIS09_RS09275 (AAIS09_09260) - 1826395..1826601 (-) 207 WP_000503437.1 hypothetical protein -

Sequence


Protein


Download         Length: 336 a.a.        Molecular weight: 37042.99 Da        Isoelectric Point: 5.3212

>NTDB_id=993709 AAIS09_RS09245 WP_000990606.1 1821461..1822471(-) (ccpA) [Streptococcus pneumoniae strain serotype 4]
MNADDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
SLAKGIDDIAEMYKYNIVLANSDEDNEKEVSVVNTLFSKQVDGIIYMGYHLTDKIRSEFSRSRTPIVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLAKENERIAFVSGPLVDDINGKVRLVGYKETLKKAGIAYSEGLVFESKYSYDDGYALAERLISSN
ATAAVVTGDELAAGVLNGLADKGVSVPEDFEIITSDDSQISRFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERSSTRKRK

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=993709 AAIS09_RS09245 WP_000990606.1 1821461..1822471(-) (ccpA) [Streptococcus pneumoniae strain serotype 4]
ATGAATGCAGATGATACAGTAACCATTTATGATGTCGCTCGTGAAGCAGGTGTTTCCATGGCGACGGTCAGCCGTGTGGT
CAATGGCAATAAAAATGTAAAAGAGAATACCCGTAAAAAAGTGCTAGAGGTAATTGATCGTTTGGATTATCGTCCAAATG
CAGTTGCGCGTGGTCTTGCAAGTAAAAAGACAACCACTGTCGGTGTCGTGATTCCAAATATTACCAATGGTTATTTTTCG
AGTTTGGCTAAGGGGATTGATGATATTGCAGAAATGTACAAGTACAATATTGTACTAGCTAATAGCGATGAAGATAACGA
GAAAGAAGTTTCTGTTGTCAATACCCTCTTTTCAAAGCAGGTAGATGGCATTATCTATATGGGTTATCACTTGACAGATA
AAATTCGCTCAGAATTTTCGCGTTCACGTACTCCGATTGTTCTCGCAGGAACTGTCGATGTTGAGCACCAGTTGCCAAGT
GTCAATATTGACTATAAGCAAGCAACAATTGATGCAGTGAGTTACCTTGCTAAAGAAAATGAGCGTATTGCTTTCGTTAG
CGGTCCGCTAGTGGATGACATCAATGGTAAGGTTCGTTTAGTTGGCTACAAGGAAACCTTGAAAAAAGCAGGAATCGCTT
ATAGTGAGGGTTTGGTATTTGAATCTAAATATAGCTATGATGATGGTTACGCCTTAGCAGAGCGTTTGATTTCATCAAAT
GCAACTGCAGCAGTTGTGACAGGTGATGAGTTGGCAGCAGGAGTCTTGAACGGTTTGGCTGATAAGGGTGTTTCTGTGCC
AGAAGATTTTGAAATTATTACTAGTGATGATTCACAAATCTCACGCTTTACCCGTCCAAACTTGACAACGATTGCCCAAC
CTCTTTATGACCTTGGTGCCATTAGTATGCGTATGTTGACCAAGATTATGCATAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGTTTGACAGAACGTAGCTCAACACGAAAACGTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

99.405

100

0.994

  ccpA Streptococcus gordonii str. Challis substr. CH1

87.126

99.405

0.866

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

98.512

0.568


Multiple sequence alignment