Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   EQB41_RS10260 Genome accession   NZ_LR129840
Coordinates   1898509..1899408 (-) Length   299 a.a.
NCBI ID   WP_000904849.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4496 isolate 4496     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1893509..1904408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB41_RS10240 rsmA 1894158..1895030 (-) 873 WP_001216845.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  EQB41_RS10245 - 1895281..1895574 (-) 294 Protein_1922 hypothetical protein -
  EQB41_RS10250 - 1895567..1896208 (-) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  EQB41_RS10255 - 1896210..1898240 (-) 2031 WP_164848190.1 bacteriocin-associated integral membrane family protein -
  EQB41_RS10260 comR 1898509..1899408 (-) 900 WP_000904849.1 helix-turn-helix transcriptional regulator Regulator
  EQB41_RS10265 rnmV 1899480..1900040 (-) 561 WP_000660013.1 ribonuclease M5 -
  EQB41_RS10270 - 1900040..1900813 (-) 774 WP_000575636.1 TatD family hydrolase -
  EQB41_RS10280 - 1901118..1902089 (-) 972 Protein_1928 DUF1542 domain-containing protein -
  EQB41_RS10290 rpmH 1902295..1902429 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  EQB41_RS10295 - 1902574..1903788 (-) 1215 WP_000666471.1 pyridoxal phosphate-dependent aminotransferase -
  EQB41_RS10300 - 1903944..1904237 (-) 294 WP_000977367.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35419.19 Da        Isoelectric Point: 4.7732

>NTDB_id=993696 EQB41_RS10260 WP_000904849.1 1898509..1899408(-) (comR) [Streptococcus pneumoniae strain 4496 isolate 4496]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALREERDFSLAESFYQSSKTFAQLIGDEFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=993696 EQB41_RS10260 WP_000904849.1 1898509..1899408(-) (comR) [Streptococcus pneumoniae strain 4496 isolate 4496]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGCAGCTAATTGGAGATGAATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.755

98.328

0.371
  comR Streptococcus suis 05ZYH33

37.457

97.324

0.365
  comR Streptococcus suis P1/7

37.457

97.324

0.365
  comR Streptococcus pyogenes MGAS8232

36.577

99.666

0.365

Multiple sequence alignment