Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AAHT65_RS01650 Genome accession   NZ_CP154443
Coordinates   297799..298440 (-) Length   213 a.a.
NCBI ID   WP_003327154.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 292799..303440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS01615 (AAHT65_01615) - 293992..294423 (+) 432 WP_094232696.1 Na(+)/H(+) antiporter subunit B -
  AAHT65_RS01620 (AAHT65_01620) - 294423..294764 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  AAHT65_RS01625 (AAHT65_01625) - 294757..296238 (+) 1482 WP_277713828.1 Na+/H+ antiporter subunit D -
  AAHT65_RS01630 (AAHT65_01630) - 296244..296720 (+) 477 WP_094232698.1 Na+/H+ antiporter subunit E -
  AAHT65_RS01635 (AAHT65_01635) - 296720..297004 (+) 285 WP_094232699.1 Na(+)/H(+) antiporter subunit F1 -
  AAHT65_RS01640 (AAHT65_01640) mnhG 296988..297362 (+) 375 WP_061570550.1 monovalent cation/H(+) antiporter subunit G -
  AAHT65_RS01645 (AAHT65_01645) - 297401..297781 (-) 381 WP_010789785.1 hotdog fold thioesterase -
  AAHT65_RS01650 (AAHT65_01650) comA 297799..298440 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  AAHT65_RS01655 (AAHT65_01655) comP 298521..300827 (-) 2307 WP_343310884.1 two-component system sensor histidine kinase ComP Regulator
  AAHT65_RS01660 (AAHT65_01660) comX 300841..301008 (-) 168 WP_094232702.1 competence pheromone ComX Regulator
  AAHT65_RS01665 (AAHT65_01665) comQ 300992..301894 (-) 903 WP_094233215.1 polyprenyl synthetase family protein Regulator
  AAHT65_RS01670 (AAHT65_01670) degQ 302079..302222 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  AAHT65_RS01675 (AAHT65_01675) - 302682..303041 (+) 360 WP_343310885.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23944.30 Da        Isoelectric Point: 4.7742

>NTDB_id=993398 AAHT65_RS01650 WP_003327154.1 297799..298440(-) (comA) [Bacillus atrophaeus strain SW]
MKKILVIDDHPAVMEGTKTILETDANLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=993398 AAHT65_RS01650 WP_003327154.1 297799..298440(-) (comA) [Bacillus atrophaeus strain SW]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATGCAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTTGTTCATAATCATGATTTTGCGGCTTATGATCTCATCTTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATTTTAAAAGAGAATCCTCTCTGCAAAATCATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATTCGTGCAGGGCTGCACGGCGCGATCAGCAAGACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTGCTCAATGATGAAATTTTAGTTGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCTGCTGCCGCTTCGCAAAATGATCAAGATGTTCTGACGCCAAGAGAATGCCTCATT
CTTCAAGAGGTGGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATCTGAGCAAGCGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAACTGAACGTCGGTTCCCGGACGGAAGCGGTACTGATTGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

89.72

100

0.901

Multiple sequence alignment