Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   E0E12_RS08740 Genome accession   NZ_LR027876
Coordinates   1725163..1725765 (-) Length   200 a.a.
NCBI ID   WP_000271554.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JKD6009 isolate JKD6009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1720163..1730765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E12_RS08720 yajC 1721659..1721919 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  E0E12_RS08725 tgt 1721938..1723077 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  E0E12_RS08730 queA 1723100..1724125 (-) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  E0E12_RS08735 ruvB 1724127..1725131 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  E0E12_RS08740 ruvA 1725163..1725765 (-) 603 WP_000271554.1 Holliday junction branch migration protein RuvA Machinery gene
  E0E12_RS08745 - 1725779..1726234 (-) 456 WP_000368902.1 ACT domain-containing protein -
  E0E12_RS08750 obgE 1726247..1727539 (-) 1293 WP_000496100.1 GTPase ObgE -
  E0E12_RS08755 rpmA 1727894..1728178 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  E0E12_RS08760 - 1728190..1728510 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  E0E12_RS08765 rplU 1728516..1728824 (-) 309 WP_000457385.1 50S ribosomal protein L21 -
  E0E12_RS08770 mreD 1728991..1729521 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  E0E12_RS08775 mreC 1729521..1730363 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  E0E12_RS08780 - 1730563..1730682 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22193.35 Da        Isoelectric Point: 5.6622

>NTDB_id=993311 E0E12_RS08740 WP_000271554.1 1725163..1725765(-) (ruvA) [Staphylococcus aureus strain JKD6009 isolate JKD6009]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYSFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=993311 E0E12_RS08740 WP_000271554.1 1725163..1725765(-) (ruvA) [Staphylococcus aureus strain JKD6009 isolate JKD6009]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATAGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(156-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment