Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   E0E08_RS08930 Genome accession   NZ_LR027873
Coordinates   1761234..1761836 (-) Length   200 a.a.
NCBI ID   WP_000271554.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2070 isolate BPH2070     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1756234..1766836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E08_RS08910 yajC 1757730..1757990 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  E0E08_RS08915 tgt 1758009..1759148 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  E0E08_RS08920 queA 1759171..1760196 (-) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  E0E08_RS08925 ruvB 1760198..1761202 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  E0E08_RS08930 ruvA 1761234..1761836 (-) 603 WP_000271554.1 Holliday junction branch migration protein RuvA Machinery gene
  E0E08_RS08935 - 1761850..1762305 (-) 456 WP_000368902.1 ACT domain-containing protein -
  E0E08_RS08940 obgE 1762318..1763610 (-) 1293 WP_000496100.1 GTPase ObgE -
  E0E08_RS08945 rpmA 1763965..1764249 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  E0E08_RS08950 - 1764261..1764581 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  E0E08_RS08955 rplU 1764587..1764895 (-) 309 WP_000457385.1 50S ribosomal protein L21 -
  E0E08_RS08960 mreD 1765062..1765592 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  E0E08_RS08965 mreC 1765592..1766434 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  E0E08_RS08970 - 1766634..1766753 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22193.35 Da        Isoelectric Point: 5.6622

>NTDB_id=993135 E0E08_RS08930 WP_000271554.1 1761234..1761836(-) (ruvA) [Staphylococcus aureus strain BPH2070 isolate BPH2070]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYSFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=993135 E0E08_RS08930 WP_000271554.1 1761234..1761836(-) (ruvA) [Staphylococcus aureus strain BPH2070 isolate BPH2070]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATAGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(156-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment