Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AAIB43_RS04280 | Genome accession | NZ_CP154366 |
| Coordinates | 912686..913105 (+) | Length | 139 a.a. |
| NCBI ID | WP_042362323.1 | Uniprot ID | - |
| Organism | Staphylococcus xylosus strain 14BME10 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 907686..918105
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAIB43_RS04250 (AAIB43_04255) | atpD | 907726..909138 (+) | 1413 | WP_042362320.1 | F0F1 ATP synthase subunit beta | - |
| AAIB43_RS04255 (AAIB43_04260) | - | 909158..909562 (+) | 405 | WP_017722095.1 | F0F1 ATP synthase subunit epsilon | - |
| AAIB43_RS04260 (AAIB43_04265) | - | 909904..910137 (+) | 234 | WP_042362321.1 | DUF1146 family protein | - |
| AAIB43_RS04265 (AAIB43_04270) | murA | 910244..911509 (+) | 1266 | WP_042362322.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| AAIB43_RS04270 (AAIB43_04275) | fabZ | 911567..912004 (+) | 438 | WP_029377977.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| AAIB43_RS04275 (AAIB43_04280) | - | 912055..912495 (-) | 441 | WP_017722099.1 | YwpF-like family protein | - |
| AAIB43_RS04280 (AAIB43_04285) | ssb | 912686..913105 (+) | 420 | WP_042362323.1 | single-stranded DNA-binding protein | Machinery gene |
| AAIB43_RS04285 (AAIB43_04290) | - | 913532..914227 (+) | 696 | WP_042362324.1 | transglycosylase family protein | - |
| AAIB43_RS04290 (AAIB43_04295) | tenA | 914667..915347 (+) | 681 | WP_042362325.1 | thiaminase II | - |
| AAIB43_RS04295 (AAIB43_04300) | thiD | 915349..916170 (+) | 822 | WP_047172091.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| AAIB43_RS04300 (AAIB43_04305) | thiM | 916163..916951 (+) | 789 | WP_047172092.1 | hydroxyethylthiazole kinase | - |
| AAIB43_RS04305 (AAIB43_04310) | thiE | 916954..917592 (+) | 639 | WP_069796199.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 16190.60 Da Isoelectric Point: 6.4617
>NTDB_id=993059 AAIB43_RS04280 WP_042362323.1 912686..913105(+) (ssb) [Staphylococcus xylosus strain 14BME10]
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYKDKDQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHFVSELFIETIRFMSPRNKDEVNEFHEIFPIEQVCNSNKEKNLQDNEIYEIV
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYKDKDQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHFVSELFIETIRFMSPRNKDEVNEFHEIFPIEQVCNSNKEKNLQDNEIYEIV
Nucleotide
Download Length: 420 bp
>NTDB_id=993059 AAIB43_RS04280 WP_042362323.1 912686..913105(+) (ssb) [Staphylococcus xylosus strain 14BME10]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACAAAAGACCCTAAAATTTATGAAAAGGAGGGGAATAAATTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAAAGATAAGGATCAAAATACTATTTGTGATTATCTCTATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGCATCACTGGACAAATGCAATCACGAAAA
TATGAAAAAGAAGGGCAGATGCATTTTGTATCGGAACTTTTTATTGAAACGATTAGATTTATGTCTCCGAGAAACAAAGA
TGAAGTTAACGAATTTCATGAAATATTCCCTATAGAGCAAGTTTGTAATTCTAATAAAGAAAAAAATTTACAAGATAATG
AAATATATGAAATTGTATAA
ATGATTAACAACATTGTCATAGTAGGGAGATTAACAAAAGACCCTAAAATTTATGAAAAGGAGGGGAATAAATTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAAAGATAAGGATCAAAATACTATTTGTGATTATCTCTATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGCATCACTGGACAAATGCAATCACGAAAA
TATGAAAAAGAAGGGCAGATGCATTTTGTATCGGAACTTTTTATTGAAACGATTAGATTTATGTCTCCGAGAAACAAAGA
TGAAGTTAACGAATTTCATGAAATATTCCCTATAGAGCAAGTTTGTAATTCTAATAAAGAAAAAAATTTACAAGATAATG
AAATATATGAAATTGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
65.421 |
76.978 |
0.504 |
| ssb | Staphylococcus aureus MW2 |
64.486 |
76.978 |
0.496 |